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Results: 1 to 20 of 117

1.

Modulated contact frequencies at gene-rich loci support a statistical helix model for mammalian chromatin organization.

Court F, Miro J, Braem C, Lelay-Taha MN, Brisebarre A, Atger F, Gostan T, Weber M, Cathala G, Forné T.

Genome Biol. 2011;12(5):R42. doi: 10.1186/gb-2011-12-5-r42. Epub 2011 May 10.

PMID:
21569291
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Multiplexed chromosome conformation capture sequencing for rapid genome-scale high-resolution detection of long-range chromatin interactions.

Stadhouders R, Kolovos P, Brouwer R, Zuin J, van den Heuvel A, Kockx C, Palstra RJ, Wendt KS, Grosveld F, van Ijcken W, Soler E.

Nat Protoc. 2013 Mar;8(3):509-24. doi: 10.1038/nprot.2013.018. Epub 2013 Feb 14.

PMID:
23411633
[PubMed - indexed for MEDLINE]
3.

Topological domains in mammalian genomes identified by analysis of chromatin interactions.

Dixon JR, Selvaraj S, Yue F, Kim A, Li Y, Shen Y, Hu M, Liu JS, Ren B.

Nature. 2012 Apr 11;485(7398):376-80. doi: 10.1038/nature11082.

PMID:
22495300
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Hi-C: a method to study the three-dimensional architecture of genomes.

van Berkum NL, Lieberman-Aiden E, Williams L, Imakaev M, Gnirke A, Mirny LA, Dekker J, Lander ES.

J Vis Exp. 2010 May 6;(39). pii: 1869. doi: 10.3791/1869.

PMID:
20461051
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Mapping cis- and trans- chromatin interaction networks using chromosome conformation capture (3C).

Miele A, Dekker J.

Methods Mol Biol. 2009;464:105-21. doi: 10.1007/978-1-60327-461-6_7.

PMID:
18951182
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

Simonis M, Klous P, Splinter E, Moshkin Y, Willemsen R, de Wit E, van Steensel B, de Laat W.

Nat Genet. 2006 Nov;38(11):1348-54. Epub 2006 Oct 8.

PMID:
17033623
[PubMed - indexed for MEDLINE]
7.

Normalization of a chromosomal contact map.

Cournac A, Marie-Nelly H, Marbouty M, Koszul R, Mozziconacci J.

BMC Genomics. 2012 Aug 30;13:436. doi: 10.1186/1471-2164-13-436.

PMID:
22935139
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A predictive computational model of the dynamic 3D interphase yeast nucleus.

Wong H, Marie-Nelly H, Herbert S, Carrivain P, Blanc H, Koszul R, Fabre E, Zimmer C.

Curr Biol. 2012 Oct 23;22(20):1881-90. doi: 10.1016/j.cub.2012.07.069. Epub 2012 Aug 30.

PMID:
22940469
[PubMed - indexed for MEDLINE]
Free Article
9.

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.

Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, Telling A, Amit I, Lajoie BR, Sabo PJ, Dorschner MO, Sandstrom R, Bernstein B, Bender MA, Groudine M, Gnirke A, Stamatoyannopoulos J, Mirny LA, Lander ES, Dekker J.

Science. 2009 Oct 9;326(5950):289-93. doi: 10.1126/science.1181369.

PMID:
19815776
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Divergence of mammalian higher order chromatin structure is associated with developmental loci.

Chambers EV, Bickmore WA, Semple CA.

PLoS Comput Biol. 2013 Apr;9(4):e1003017. doi: 10.1371/journal.pcbi.1003017. Epub 2013 Apr 4.

PMID:
23592965
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Determining spatial chromatin organization of large genomic regions using 5C technology.

van Berkum NL, Dekker J.

Methods Mol Biol. 2009;567:189-213. doi: 10.1007/978-1-60327-414-2_13. Review.

PMID:
19588094
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Close 3D proximity of evolutionary breakpoints argues for the notion of spatial synteny.

Véron AS, Lemaitre C, Gautier C, Lacroix V, Sagot MF.

BMC Genomics. 2011 Jun 10;12:303. doi: 10.1186/1471-2164-12-303.

PMID:
21663614
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Looping probabilities in model interphase chromosomes.

Rosa A, Becker NB, Everaers R.

Biophys J. 2010 Jun 2;98(11):2410-9. doi: 10.1016/j.bpj.2010.01.054.

PMID:
20513384
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Segmental folding of chromosomes: a basis for structural and regulatory chromosomal neighborhoods?

Nora EP, Dekker J, Heard E.

Bioessays. 2013 Sep;35(9):818-28. doi: 10.1002/bies.201300040. Epub 2013 Jul 5.

PMID:
23832846
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Genome-wide scanning of HoxB1-associated loci in mouse ES cells using an open-ended Chromosome Conformation Capture methodology.

Würtele H, Chartrand P.

Chromosome Res. 2006;14(5):477-95. Epub 2006 Jul 12.

PMID:
16823611
[PubMed - indexed for MEDLINE]
16.

Computing chromosome conformation.

Fraser J, Rousseau M, Blanchette M, Dostie J.

Methods Mol Biol. 2010;674:251-68. doi: 10.1007/978-1-60761-854-6_16.

PMID:
20827597
[PubMed - indexed for MEDLINE]
17.

Analysis of fine-scale mammalian evolutionary breakpoints provides new insight into their relation to genome organisation.

Lemaitre C, Zaghloul L, Sagot MF, Gautier C, Arneodo A, Tannier E, Audit B.

BMC Genomics. 2009 Jul 24;10:335. doi: 10.1186/1471-2164-10-335.

PMID:
19630943
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Insights into interphase large-scale chromatin structure from analysis of engineered chromosome regions.

Belmont AS, Hu Y, Sinclair PB, Wu W, Bian Q, Kireev I.

Cold Spring Harb Symp Quant Biol. 2010;75:453-60. doi: 10.1101/sqb.2010.75.050. Epub 2011 Apr 5.

PMID:
21467143
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Comparative analysis of DNA replication timing reveals conserved large-scale chromosomal architecture.

Yaffe E, Farkash-Amar S, Polten A, Yakhini Z, Tanay A, Simon I.

PLoS Genet. 2010 Jul 1;6(7):e1001011. doi: 10.1371/journal.pgen.1001011.

PMID:
20617169
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The properties of genome conformation and spatial gene interaction and regulation networks of normal and malignant human cell types.

Wang Z, Cao R, Taylor K, Briley A, Caldwell C, Cheng J.

PLoS One. 2013;8(3):e58793. doi: 10.1371/journal.pone.0058793. Epub 2013 Mar 11.

PMID:
23536826
[PubMed - indexed for MEDLINE]
Free PMC Article

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