Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 100

1.

What does biologically meaningful mean? A perspective on gene regulatory network validation.

Walhout AJ.

Genome Biol. 2011;12(4):109. doi: 10.1186/gb-2011-12-4-109. Epub 2011 Apr 11.

PMID:
21489330
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A review of integration strategies to support gene regulatory network construction.

Chen H, VanBuren V.

ScientificWorldJournal. 2012;2012:435257. doi: 10.1100/2012/435257. Epub 2012 Dec 27. Review.

PMID:
23365519
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks.

Marbach D, Roy S, Ay F, Meyer PE, Candeias R, Kahveci T, Bristow CA, Kellis M.

Genome Res. 2012 Jul;22(7):1334-49. doi: 10.1101/gr.127191.111. Epub 2012 Mar 28.

PMID:
22456606
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Constructing logical models of gene regulatory networks by integrating transcription factor-DNA interactions with expression data: an entropy-based approach.

Karlebach G, Shamir R.

J Comput Biol. 2012 Jan;19(1):30-41. doi: 10.1089/cmb.2011.0100.

PMID:
22216865
[PubMed - indexed for MEDLINE]
5.

BioTapestry: a tool to visualize the dynamic properties of gene regulatory networks.

Longabaugh WJ.

Methods Mol Biol. 2012;786:359-94. doi: 10.1007/978-1-61779-292-2_21.

PMID:
21938637
[PubMed - indexed for MEDLINE]
6.

Network component analysis provides quantitative insights on an Arabidopsis transcription factor-gene regulatory network.

Misra A, Sriram G.

BMC Syst Biol. 2013 Nov 14;7:126. doi: 10.1186/1752-0509-7-126.

PMID:
24228871
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Reverse engineering module networks by PSO-RNN hybrid modeling.

Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S15. doi: 10.1186/1471-2164-10-S1-S15.

PMID:
19594874
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Using directed information to build biologically relevant influence networks.

Rao A, Hero AO 3rd, States DJ, Engel JD.

Comput Syst Bioinformatics Conf. 2007;6:145-56.

PMID:
17951820
[PubMed - indexed for MEDLINE]
Free Article
9.

From plant gene regulatory grids to network dynamics.

Mejia-Guerra MK, Pomeranz M, Morohashi K, Grotewold E.

Biochim Biophys Acta. 2012 May;1819(5):454-65. doi: 10.1016/j.bbagrm.2012.02.016. Epub 2012 Mar 2. Review.

PMID:
22406342
[PubMed - indexed for MEDLINE]
Free Article
10.

GeNGe: systematic generation of gene regulatory networks.

Hache H, Wierling C, Lehrach H, Herwig R.

Bioinformatics. 2009 May 1;25(9):1205-7. doi: 10.1093/bioinformatics/btp115. Epub 2009 Feb 27.

PMID:
19251773
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Supervised inference of gene regulatory networks from positive and unlabeled examples.

Mordelet F, Vert JP.

Methods Mol Biol. 2013;939:47-58. doi: 10.1007/978-1-62703-107-3_5.

PMID:
23192540
[PubMed - indexed for MEDLINE]
12.

Gene-centered regulatory networks.

Arda HE, Walhout AJ.

Brief Funct Genomics. 2010 Jan;9(1):4-12. doi: 10.1093/bfgp/elp049. Epub 2009 Dec 13. Review.

PMID:
20008400
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Characterizing regulatory path motifs in integrated networks using perturbational data.

Joshi A, Van Parys T, Peer YV, Michoel T.

Genome Biol. 2010;11(3):R32. doi: 10.1186/gb-2010-11-3-r32. Epub 2010 Mar 11.

PMID:
20230615
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Harnessing diversity towards the reconstructing of large scale gene regulatory networks.

Hase T, Ghosh S, Yamanaka R, Kitano H.

PLoS Comput Biol. 2013;9(11):e1003361. doi: 10.1371/journal.pcbi.1003361. Epub 2013 Nov 21.

PMID:
24278007
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

An information theoretic method for reconstructing local regulatory network modules from polymorphic samples.

Jagalur M, Kulp D.

Comput Syst Bioinformatics Conf. 2007;6:133-43.

PMID:
17951819
[PubMed - indexed for MEDLINE]
Free Article
16.

Diversity of temporal correlations between genes in models of noisy and noiseless gene networks.

Ribeiro AS, Lloyd-Price J, Chowdhury S, Yli-Harja O.

Biosystems. 2011 May-Jun;104(2-3):136-44. doi: 10.1016/j.biosystems.2011.02.003. Epub 2011 Feb 26.

PMID:
21356270
[PubMed - indexed for MEDLINE]
17.

Integrated inference and analysis of regulatory networks from multi-level measurements.

Poultney CS, Greenfield A, Bonneau R.

Methods Cell Biol. 2012;110:19-56. doi: 10.1016/B978-0-12-388403-9.00002-3. Review.

PMID:
22482944
[PubMed - indexed for MEDLINE]
18.

Comparative study of three commonly used continuous deterministic methods for modeling gene regulation networks.

Swain MT, Mandel JJ, Dubitzky W.

BMC Bioinformatics. 2010 Sep 14;11:459. doi: 10.1186/1471-2105-11-459.

PMID:
20840745
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Modeling stochasticity and robustness in gene regulatory networks.

Garg A, Mohanram K, Di Cara A, De Micheli G, Xenarios I.

Bioinformatics. 2009 Jun 15;25(12):i101-9. doi: 10.1093/bioinformatics/btp214.

PMID:
19477975
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Computational reconstruction of transcriptional relationships from ChIP-chip data.

Le NT, Ho TB, Ho BH.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Mar-Apr;10(2):300-7.

PMID:
22848139
[PubMed - indexed for MEDLINE]

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk