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Results: 1 to 20 of 133

1.

Discovery of permuted and recently split transfer RNAs in Archaea.

Chan PP, Cozen AE, Lowe TM.

Genome Biol. 2011;12(4):R38. doi: 10.1186/gb-2011-12-4-r38. Epub 2011 Apr 13.

PMID:
21489296
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Disrupted tRNA gene diversity and possible evolutionary scenarios.

Sugahara J, Fujishima K, Morita K, Tomita M, Kanai A.

J Mol Evol. 2009 Nov;69(5):497-504. doi: 10.1007/s00239-009-9294-6. Epub 2009 Oct 14.

PMID:
19826747
[PubMed - indexed for MEDLINE]
3.

SPLITS: a new program for predicting split and intron-containing tRNA genes at the genome level.

Sugahara J, Yachie N, Sekine Y, Soma A, Matsui M, Tomita M, Kanai A.

In Silico Biol. 2006;6(5):411-8.

PMID:
17274770
[PubMed - indexed for MEDLINE]
4.

Permuted tRNA genes in the nuclear and nucleomorph genomes of photosynthetic eukaryotes.

Maruyama S, Sugahara J, Kanai A, Nozaki H.

Mol Biol Evol. 2010 May;27(5):1070-6. doi: 10.1093/molbev/msp313. Epub 2009 Dec 18.

PMID:
20022888
[PubMed - indexed for MEDLINE]
Free Article
5.

Sequence evidence in the archaeal genomes that tRNAs emerged through the combination of ancestral genes as 5' and 3' tRNA halves.

Fujishima K, Sugahara J, Tomita M, Kanai A.

PLoS One. 2008 Feb 20;3(2):e1622. doi: 10.1371/journal.pone.0001622.

PMID:
18286179
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Comprehensive analysis of archaeal tRNA genes reveals rapid increase of tRNA introns in the order thermoproteales.

Sugahara J, Kikuta K, Fujishima K, Yachie N, Tomita M, Kanai A.

Mol Biol Evol. 2008 Dec;25(12):2709-16. doi: 10.1093/molbev/msn216. Epub 2008 Oct 1.

PMID:
18832079
[PubMed - indexed for MEDLINE]
Free Article
7.

Tri-split tRNA is a transfer RNA made from 3 transcripts that provides insight into the evolution of fragmented tRNAs in archaea.

Fujishima K, Sugahara J, Kikuta K, Hirano R, Sato A, Tomita M, Kanai A.

Proc Natl Acad Sci U S A. 2009 Feb 24;106(8):2683-7. doi: 10.1073/pnas.0808246106. Epub 2009 Feb 3.

PMID:
19190180
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5'- and 3'-halves.

Randau L, Münch R, Hohn MJ, Jahn D, Söll D.

Nature. 2005 Feb 3;433(7025):537-41.

PMID:
15690044
[PubMed - indexed for MEDLINE]
9.

Large-scale tRNA intron transposition in the archaeal order Thermoproteales represents a novel mechanism of intron gain.

Fujishima K, Sugahara J, Tomita M, Kanai A.

Mol Biol Evol. 2010 Oct;27(10):2233-43. doi: 10.1093/molbev/msq111. Epub 2010 Apr 29.

PMID:
20430862
[PubMed - indexed for MEDLINE]
Free Article
10.

Genomic heterogeneity in a natural archaeal population suggests a model of tRNA gene disruption.

Sugahara J, Fujishima K, Nunoura T, Takaki Y, Takami H, Takai K, Tomita M, Kanai A.

PLoS One. 2012;7(3):e32504. doi: 10.1371/journal.pone.0032504. Epub 2012 Mar 5.

PMID:
22403667
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Novel hybrid encodes both continuous and split tRNA genes?

Das S, Mitra S, Sahoo S, Chakrabarti J.

J Biomol Struct Dyn. 2011 Apr;28(5):827-31.

PMID:
21294593
[PubMed - indexed for MEDLINE]
12.

Characterization of a whole set of tRNA molecules in an aerobic hyper-thermophilic Crenarchaeon, Aeropyrum pernix K1.

Yamazaki S, Kikuchi H, Kawarabayasi Y.

DNA Res. 2005;12(6):403-16. Epub 2006 Feb 23.

PMID:
16769697
[PubMed - indexed for MEDLINE]
Free Article
14.

In silico screening of archaeal tRNA-encoding genes having multiple introns with bulge-helix-bulge splicing motifs.

Sugahara J, Yachie N, Arakawa K, Tomita M.

RNA. 2007 May;13(5):671-81. Epub 2007 Mar 16.

PMID:
17369313
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Gain and loss of an intron in a protein-coding gene in Archaea: the case of an archaeal RNA pseudouridine synthase gene.

Yokobori S, Itoh T, Yoshinari S, Nomura N, Sako Y, Yamagishi A, Oshima T, Kita K, Watanabe Y.

BMC Evol Biol. 2009 Aug 11;9:198. doi: 10.1186/1471-2148-9-198.

PMID:
19671140
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Transfer RNA genes in pieces.

Randau L, Söll D.

EMBO Rep. 2008 Jul;9(7):623-8. doi: 10.1038/embor.2008.101. Epub 2008 Jun 13.

PMID:
18552771
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Identity elements of archaeal tRNA.

Mallick B, Chakrabarti J, Sahoo S, Ghosh Z, Das S.

DNA Res. 2005;12(4):235-46.

PMID:
16769686
[PubMed - indexed for MEDLINE]
Free Article
18.

Avatar pre-tRNAs help elucidate the properties of tRNA-splicing endonucleases that produce tRNA from permuted genes.

Tocchini-Valentini GD, Tocchini-Valentini GP.

Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21325-9. doi: 10.1073/pnas.1219336110. Epub 2012 Dec 11.

PMID:
23236183
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Formal proof that the split genes of tRNAs of Nanoarchaeum equitans are an ancestral character.

Di Giulio M.

J Mol Evol. 2009 Nov;69(5):505-11. doi: 10.1007/s00239-009-9280-z. Epub 2009 Sep 17.

PMID:
19760446
[PubMed - indexed for MEDLINE]
20.

Discovery of a minimal form of RNase P in Pyrobaculum.

Lai LB, Chan PP, Cozen AE, Bernick DL, Brown JW, Gopalan V, Lowe TM.

Proc Natl Acad Sci U S A. 2010 Dec 28;107(52):22493-8. doi: 10.1073/pnas.1013969107. Epub 2010 Dec 6.

PMID:
21135215
[PubMed - indexed for MEDLINE]
Free PMC Article

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