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Results: 1 to 20 of 100

1.

An optimized microarray platform for assaying genomic variation in Plasmodium falciparum field populations.

Tan JC, Miller BA, Tan A, Patel JJ, Cheeseman IH, Anderson TJ, Manske M, Maslen G, Kwiatkowski DP, Ferdig MT.

Genome Biol. 2011;12(4):R35. doi: 10.1186/gb-2011-12-4-r35. Epub 2011 Apr 8.

PMID:
21477297
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Detection of genome-wide polymorphisms in the AT-rich Plasmodium falciparum genome using a high-density microarray.

Jiang H, Yi M, Mu J, Zhang L, Ivens A, Klimczak LJ, Huyen Y, Stephens RM, Su XZ.

BMC Genomics. 2008 Aug 25;9:398. doi: 10.1186/1471-2164-9-398.

PMID:
18724869
[PubMed - indexed for MEDLINE]
Free PMC Article
3.
4.

Evaluation of copy number variation detection for a SNP array platform.

Zhang X, Du R, Li S, Zhang F, Jin L, Wang H.

BMC Bioinformatics. 2014 Feb 21;15:50. doi: 10.1186/1471-2105-15-50.

PMID:
24555668
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Optimized detection of sequence variation in heterozygous genomes using DNA microarrays with isothermal-melting probes.

Gresham D, Curry B, Ward A, Gordon DB, Brizuela L, Kruglyak L, Botstein D.

Proc Natl Acad Sci U S A. 2010 Jan 26;107(4):1482-7. doi: 10.1073/pnas.0913883107. Epub 2010 Jan 8.

PMID:
20080586
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Optimizing comparative genomic hybridization probes for genotyping and SNP detection in Plasmodium falciparum.

Tan JC, Patel JJ, Tan A, Blain JC, Albert TJ, Lobo NF, Ferdig MT.

Genomics. 2009 Jun;93(6):543-50. doi: 10.1016/j.ygeno.2009.02.007. Epub 2009 Mar 11.

PMID:
19285129
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Exploiting sequence similarity to validate the sensitivity of SNP arrays in detecting fine-scaled copy number variations.

Wong G, Leckie C, Gorringe KL, Haviv I, Campbell IG, Kowalczyk A.

Bioinformatics. 2010 Apr 15;26(8):1007-14. doi: 10.1093/bioinformatics/btq088. Epub 2010 Feb 25.

PMID:
20189937
[PubMed - indexed for MEDLINE]
Free Article
8.

Genome-wide mapping of copy number variation in humans: comparative analysis of high resolution array platforms.

Haraksingh RR, Abyzov A, Gerstein M, Urban AE, Snyder M.

PLoS One. 2011;6(11):e27859. doi: 10.1371/journal.pone.0027859. Epub 2011 Nov 30.

PMID:
22140474
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Analysis of copy loss and gain variations in Holstein cattle autosomes using BeadChip SNPs.

Seroussi E, Glick G, Shirak A, Yakobson E, Weller JI, Ezra E, Zeron Y.

BMC Genomics. 2010 Nov 29;11:673. doi: 10.1186/1471-2164-11-673.

PMID:
21114805
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Optimizing copy number variation analysis using genome-wide short sequence oligonucleotide arrays.

Oldridge DA, Banerjee S, Setlur SR, Sboner A, Demichelis F.

Nucleic Acids Res. 2010 Jun;38(10):3275-86. doi: 10.1093/nar/gkq073. Epub 2010 Feb 15.

PMID:
20156996
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Detection of copy number variation using SNP genotyping.

Cooper GM, Mefford HC.

Methods Mol Biol. 2011;767:243-52. doi: 10.1007/978-1-61779-201-4_18.

PMID:
21822880
[PubMed - indexed for MEDLINE]
12.

Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping.

Zhan B, Fadista J, Thomsen B, Hedegaard J, Panitz F, Bendixen C.

BMC Genomics. 2011 Nov 14;12:557. doi: 10.1186/1471-2164-12-557.

PMID:
22082336
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Comparing CNV detection methods for SNP arrays.

Winchester L, Yau C, Ragoussis J.

Brief Funct Genomic Proteomic. 2009 Sep;8(5):353-66. doi: 10.1093/bfgp/elp017. Epub 2009 Sep 8. Review.

PMID:
19737800
[PubMed - indexed for MEDLINE]
Free Article
14.

DNA microarray-based mutation discovery and genotyping.

Gresham D.

Methods Mol Biol. 2011;772:179-91. doi: 10.1007/978-1-61779-228-1_10.

PMID:
22065438
[PubMed - indexed for MEDLINE]
15.

Improved detection of global copy number variation using high density, non-polymorphic oligonucleotide probes.

Shen F, Huang J, Fitch KR, Truong VB, Kirby A, Chen W, Zhang J, Liu G, McCarroll SA, Jones KW, Shapero MH.

BMC Genet. 2008 Mar 28;9:27. doi: 10.1186/1471-2156-9-27.

PMID:
18373861
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The landscape of inherited and de novo copy number variants in a Plasmodium falciparum genetic cross.

Samarakoon U, Gonzales JM, Patel JJ, Tan A, Checkley L, Ferdig MT.

BMC Genomics. 2011 Sep 22;12:457. doi: 10.1186/1471-2164-12-457.

PMID:
21936954
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

An optimization framework for unsupervised identification of rare copy number variation from SNP array data.

Yavas G, Koyutürk M, Ozsoyoğlu M, Gould MP, LaFramboise T.

Genome Biol. 2009;10(10):R119. doi: 10.1186/gb-2009-10-10-r119. Epub 2009 Oct 23.

PMID:
19849861
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Distinguishing somatic and germline copy number events in cancer patient DNA hybridized to whole-genome SNP genotyping arrays.

Ha G, Shah S.

Methods Mol Biol. 2013;973:355-72. doi: 10.1007/978-1-62703-281-0_22.

PMID:
23412801
[PubMed - indexed for MEDLINE]
19.

Application of Nexus copy number software for CNV detection and analysis.

Darvishi K.

Curr Protoc Hum Genet. 2010 Apr;Chapter 4:Unit 4.14.1-28. doi: 10.1002/0471142905.hg0414s65.

PMID:
20373515
[PubMed - indexed for MEDLINE]
20.

Oligonucleotide microarrays for clinical diagnosis of copy number variation and zygosity status.

Miller DT, Shen Y, Wu BL.

Curr Protoc Hum Genet. 2012 Jul;Chapter 8:Unit8.12. doi: 10.1002/0471142905.hg0812s74.

PMID:
22786613
[PubMed - indexed for MEDLINE]

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