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Results: 1 to 20 of 102

1.

A genome-wide view of mutation rate co-variation using multivariate analyses.

Ananda G, Chiaromonte F, Makova KD.

Genome Biol. 2011;12(3):R27. doi: 10.1186/gb-2011-12-3-r27. Epub 2011 Mar 22.

PMID:
21426544
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Plastid genome sequence of a wild woody oil species, Prinsepia utilis, provides insights into evolutionary and mutational patterns of Rosaceae chloroplast genomes.

Wang S, Shi C, Gao LZ.

PLoS One. 2013 Sep 2;8(9):e73946. doi: 10.1371/journal.pone.0073946. eCollection 2013.

PMID:
24023915
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

The genome-wide determinants of human and chimpanzee microsatellite evolution.

Kelkar YD, Tyekucheva S, Chiaromonte F, Makova KD.

Genome Res. 2008 Jan;18(1):30-8. Epub 2007 Nov 21.

PMID:
18032720
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Editorial: protein systems biology: method, regulation, and network.

Chen Q, Chen M.

Curr Protein Pept Sci. 2014;15(6):519-21.

PMID:
25135673
[PubMed - in process]
5.

Interactions among genomic structure, function, and evolution revealed by comprehensive analysis of the Arabidopsis thaliana genome.

Wu C, Wang S, Zhang HB.

Genomics. 2006 Oct;88(4):394-406. Epub 2006 Jun 27.

PMID:
16806804
[PubMed - indexed for MEDLINE]
Free Article
6.

Population genomic analysis of model and nonmodel organisms using sequenced RAD tags.

Hohenlohe PA, Catchen J, Cresko WA.

Methods Mol Biol. 2012;888:235-60. doi: 10.1007/978-1-61779-870-2_14.

PMID:
22665285
[PubMed - indexed for MEDLINE]
7.

Comparisons of mutation rate variation at genome-wide microsatellites: evolutionary insights from two cultivated rice and their wild relatives.

Gao LZ, Xu H.

BMC Evol Biol. 2008 Jan 16;8:11. doi: 10.1186/1471-2148-8-11.

PMID:
18199337
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).

Foffi G, Pastore A, Piazza F, Temussi PA.

Phys Biol. 2013 Aug 2;10(4):040301. [Epub ahead of print]

PMID:
23912807
[PubMed - as supplied by publisher]
9.

Comparative mitochondrial genomics of snakes: extraordinary substitution rate dynamics and functionality of the duplicate control region.

Jiang ZJ, Castoe TA, Austin CC, Burbrink FT, Herron MD, McGuire JA, Parkinson CL, Pollock DD.

BMC Evol Biol. 2007 Jul 26;7:123.

PMID:
17655768
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Chromatin structure and evolution in the human genome.

Prendergast JG, Campbell H, Gilbert N, Dunlop MG, Bickmore WA, Semple CA.

BMC Evol Biol. 2007 May 9;7:72.

PMID:
17490477
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Substitution rate variation at human CpG sites correlates with non-CpG divergence, methylation level and GC content.

Mugal CF, Ellegren H.

Genome Biol. 2011 Jun 22;12(6):R58. doi: 10.1186/gb-2011-12-6-r58.

PMID:
21696599
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach.

Rivera AS, Pankey MS, Plachetzki DC, Villacorta C, Syme AE, Serb JM, Omilian AR, Oakley TH.

BMC Evol Biol. 2010 Apr 30;10:123. doi: 10.1186/1471-2148-10-123.

PMID:
20433736
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A macaque's-eye view of human insertions and deletions: differences in mechanisms.

Kvikstad EM, Tyekucheva S, Chiaromonte F, Makova KD.

PLoS Comput Biol. 2007 Sep;3(9):1772-82. Epub 2007 Jul 27.

PMID:
17941704
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Variation in heterozygosity predicts variation in human substitution rates between populations, individuals and genomic regions.

Amos W.

PLoS One. 2013 Apr 30;8(4):e63048. doi: 10.1371/journal.pone.0063048. Print 2013. Erratum in: PLoS One. 2013;8(6). doi:10.1371/annotation/35be1800-1e9f-4b76-8b6a-660998434b13.

PMID:
23646173
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Linking great apes genome evolution across time scales using polymorphism-aware phylogenetic models.

De Maio N, Schlötterer C, Kosiol C.

Mol Biol Evol. 2013 Oct;30(10):2249-62. doi: 10.1093/molbev/mst131. Epub 2013 Aug 1.

PMID:
23906727
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

DNA slippage occurs at microsatellite loci without minimal threshold length in humans: a comparative genomic approach.

Leclercq S, Rivals E, Jarne P.

Genome Biol Evol. 2010 Jul 12;2:325-35. doi: 10.1093/gbe/evq023.

PMID:
20624737
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Investigating the relationship of DNA methylation with mutation rate and allele frequency in the human genome.

Xia J, Han L, Zhao Z.

BMC Genomics. 2012;13 Suppl 8:S7. doi: 10.1186/1471-2164-13-S8-S7. Epub 2012 Dec 17.

PMID:
23281708
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Analysis of complete nucleotide sequences of 12 Gossypium chloroplast genomes: origin and evolution of allotetraploids.

Xu Q, Xiong G, Li P, He F, Huang Y, Wang K, Li Z, Hua J.

PLoS One. 2012;7(8):e37128. doi: 10.1371/journal.pone.0037128. Epub 2012 Aug 2. Erratum in: PLoS One. 2013;8(5). doi: 10.1371/annotation/47563c17-536c-465d-9b93-cd35a78f6e66.

PMID:
22876273
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Primate phylogenomics: developing numerous nuclear non-coding, non-repetitive markers for ecological and phylogenetic applications and analysis of evolutionary rate variation.

Peng Z, Elango N, Wildman DE, Yi SV.

BMC Genomics. 2009 May 26;10:247. doi: 10.1186/1471-2164-10-247.

PMID:
19470178
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Genome-scale computational analysis of DNA curvature and repeats in Arabidopsis and rice uncovers plant-specific genomic properties.

Masoudi-Nejad A, Movahedi S, Jáuregui R.

BMC Genomics. 2011 May 6;12:214. doi: 10.1186/1471-2164-12-214.

PMID:
21548945
[PubMed - indexed for MEDLINE]
Free PMC Article

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