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Results: 1 to 20 of 119

1.

Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities.

Stewart FJ, Sharma AK, Bryant JA, Eppley JM, DeLong EF.

Genome Biol. 2011;12(3):R26. doi: 10.1186/gb-2011-12-3-r26. Epub 2011 Mar 22.

PMID:
21426537
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution.

Davidson RM, Gowda M, Moghe G, Lin H, Vaillancourt B, Shiu SH, Jiang N, Robin Buell C.

Plant J. 2012 Aug;71(3):492-502. doi: 10.1111/j.1365-313X.2012.05005.x. Epub 2012 Jun 5.

PMID:
22443345
[PubMed - indexed for MEDLINE]
3.

Rapid phylogenetic and functional classification of short genomic fragments with signature peptides.

Berendzen J, Bruno WJ, Cohn JD, Hengartner NW, Kuske CR, McMahon BH, Wolinsky MA, Xie G.

BMC Res Notes. 2012 Aug 28;5:460. doi: 10.1186/1756-0500-5-460.

PMID:
22925230
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Microbial community gene expression in ocean surface waters.

Frias-Lopez J, Shi Y, Tyson GW, Coleman ML, Schuster SC, Chisholm SW, Delong EF.

Proc Natl Acad Sci U S A. 2008 Mar 11;105(10):3805-10. doi: 10.1073/pnas.0708897105. Epub 2008 Mar 3.

PMID:
18316740
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean.

Shi Y, Tyson GW, Eppley JM, DeLong EF.

ISME J. 2011 Jun;5(6):999-1013. doi: 10.1038/ismej.2010.189. Epub 2010 Dec 9.

PMID:
21151004
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Generation and analysis of a mouse intestinal metatranscriptome through Illumina based RNA-sequencing.

Xiong X, Frank DN, Robertson CE, Hung SS, Markle J, Canty AJ, McCoy KD, Macpherson AJ, Poussier P, Danska JS, Parkinson J.

PLoS One. 2012;7(4):e36009. doi: 10.1371/journal.pone.0036009. Epub 2012 Apr 27.

PMID:
22558305
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Transcriptome fingerprinting analysis: an approach to explore gene expression patterns in marine microbial communities.

Coll-Lladó M, Acinas SG, Pujades C, Pedrós-Alió C.

PLoS One. 2011;6(8):e22950. doi: 10.1371/journal.pone.0022950. Epub 2011 Aug 9.

PMID:
21857972
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Metagenomic insights into the evolution, function, and complexity of the planktonic microbial community of Lake Lanier, a temperate freshwater ecosystem.

Oh S, Caro-Quintero A, Tsementzi D, DeLeon-Rodriguez N, Luo C, Poretsky R, Konstantinidis KT.

Appl Environ Microbiol. 2011 Sep;77(17):6000-11. doi: 10.1128/AEM.00107-11. Epub 2011 Jul 15.

PMID:
21764968
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Phylogenetic molecular ecological network of soil microbial communities in response to elevated CO2.

Zhou J, Deng Y, Luo F, He Z, Yang Y.

MBio. 2011 Jul 26;2(4). pii: e00122-11. doi: 10.1128/mBio.00122-11. Print 2011.

PMID:
21791581
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities.

Gilbert JA, Field D, Huang Y, Edwards R, Li W, Gilna P, Joint I.

PLoS One. 2008 Aug 22;3(8):e3042. doi: 10.1371/journal.pone.0003042.

PMID:
18725995
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Microbial metatranscriptomics in a permanent marine oxygen minimum zone.

Stewart FJ, Ulloa O, DeLong EF.

Environ Microbiol. 2012 Jan;14(1):23-40. doi: 10.1111/j.1462-2920.2010.02400.x. Epub 2011 Jan 7.

PMID:
21210935
[PubMed - indexed for MEDLINE]
12.

Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat.

Liu Z, Klatt CG, Wood JM, Rusch DB, Ludwig M, Wittekindt N, Tomsho LP, Schuster SC, Ward DM, Bryant DA.

ISME J. 2011 Aug;5(8):1279-90. doi: 10.1038/ismej.2011.37. Epub 2011 Jun 23.

PMID:
21697962
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre.

Poretsky RS, Hewson I, Sun S, Allen AE, Zehr JP, Moran MA.

Environ Microbiol. 2009 Jun;11(6):1358-75. doi: 10.1111/j.1462-2920.2008.01863.x. Epub 2009 Feb 4.

PMID:
19207571
[PubMed - indexed for MEDLINE]
14.

A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.

Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Rogozin IB, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA.

Genome Biol. 2004;5(2):R7. Epub 2004 Jan 15.

PMID:
14759257
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Cloning, genomic organization, alternative transcripts and expression analysis of CD99L2, a novel paralog of human CD99, and identification of evolutionary conserved motifs.

Suh YH, Shin YK, Kook MC, Oh KI, Park WS, Kim SH, Lee IS, Park HJ, Huh TL, Park SH.

Gene. 2003 Mar 27;307:63-76.

PMID:
12706889
[PubMed - indexed for MEDLINE]
16.

Comparative analyses of six solanaceous transcriptomes reveal a high degree of sequence conservation and species-specific transcripts.

Rensink WA, Lee Y, Liu J, Iobst S, Ouyang S, Buell CR.

BMC Genomics. 2005 Sep 14;6:124.

PMID:
16162286
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Gut microbial gene expression in mother-fed and formula-fed piglets.

Poroyko V, White JR, Wang M, Donovan S, Alverdy J, Liu DC, Morowitz MJ.

PLoS One. 2010 Aug 27;5(8):e12459. doi: 10.1371/journal.pone.0012459.

PMID:
20805981
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column.

Shi Y, Tyson GW, DeLong EF.

Nature. 2009 May 14;459(7244):266-9. doi: 10.1038/nature08055.

PMID:
19444216
[PubMed - indexed for MEDLINE]
19.

Gene expression profiling: metatranscriptomics.

Gilbert JA, Hughes M.

Methods Mol Biol. 2011;733:195-205. doi: 10.1007/978-1-61779-089-8_14.

PMID:
21431772
[PubMed - indexed for MEDLINE]
20.

Threatened corals provide underexplored microbial habitats.

Sunagawa S, Woodley CM, Medina M.

PLoS One. 2010 Mar 5;5(3):e9554. doi: 10.1371/journal.pone.0009554.

PMID:
20221265
[PubMed - indexed for MEDLINE]
Free PMC Article

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