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Results: 1 to 20 of 78

1.

hzAnalyzer: detection, quantification, and visualization of contiguous homozygosity in high-density genotyping datasets.

Johnson TA, Niimura Y, Tanaka H, Nakamura Y, Tsunoda T.

Genome Biol. 2011;12(3):R21. doi: 10.1186/gb-2011-12-3-r21. Epub 2011 Mar 11.

PMID:
21396103
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

KinSNP software for homozygosity mapping of disease genes using SNP microarrays.

Amir el-AD, Bartal O, Morad E, Nagar T, Sheynin J, Parvari R, Chalifa-Caspi V.

Hum Genomics. 2010 Aug;4(6):394-401.

PMID:
20846928
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

A quantitatively-modeled homozygosity mapping algorithm, qHomozygosityMapping, utilizing whole genome single nucleotide polymorphism genotyping data.

Huqun, Fukuyama S, Morino H, Miyazawa H, Tanaka T, Suzuki T, Kohda M, Kawakami H, Okazaki Y, Seyama K, Hagiwara K.

BMC Bioinformatics. 2010 Oct 15;11 Suppl 7:S5. doi: 10.1186/1471-2105-11-S7-S5.

PMID:
21106127
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Homozygosity haplotype allows a genomewide search for the autosomal segments shared among patients.

Miyazawa H, Kato M, Awata T, Kohda M, Iwasa H, Koyama N, Tanaka T, Huqun, Kyo S, Okazaki Y, Hagiwara K.

Am J Hum Genet. 2007 Jun;80(6):1090-102. Epub 2007 May 2.

PMID:
17503327
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Estimating autozygosity from high-throughput information: effects of SNP density and genotyping errors.

Ferenčaković M, Sölkner J, Curik I.

Genet Sel Evol. 2013 Oct 29;45:42. doi: 10.1186/1297-9686-45-42.

PMID:
24168655
[PubMed - indexed for MEDLINE]
Free Article
6.

Long contiguous stretches of homozygosity in the human genome.

Li LH, Ho SF, Chen CH, Wei CY, Wong WC, Li LY, Hung SI, Chung WH, Pan WH, Lee MT, Tsai FJ, Chang CF, Wu JY, Chen YT.

Hum Mutat. 2006 Nov;27(11):1115-21.

PMID:
16955415
[PubMed - indexed for MEDLINE]
7.

Savant: genome browser for high-throughput sequencing data.

Fiume M, Williams V, Brook A, Brudno M.

Bioinformatics. 2010 Aug 15;26(16):1938-44. doi: 10.1093/bioinformatics/btq332. Epub 2010 Jun 20.

PMID:
20562449
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

HapScope: a software system for automated and visual analysis of functionally annotated haplotypes.

Zhang J, Rowe WL, Struewing JP, Buetow KH.

Nucleic Acids Res. 2002 Dec 1;30(23):5213-21.

PMID:
12466546
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

SHROOM3 is a novel candidate for heterotaxy identified by whole exome sequencing.

Tariq M, Belmont JW, Lalani S, Smolarek T, Ware SM.

Genome Biol. 2011 Sep 21;12(9):R91. doi: 10.1186/gb-2011-12-9-r91.

PMID:
21936905
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Sniper: improved SNP discovery by multiply mapping deep sequenced reads.

Simola DF, Kim J.

Genome Biol. 2011 Jun 20;12(6):R55. doi: 10.1186/gb-2011-12-6-r55.

PMID:
21689413
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Extended tracts of homozygosity in outbred human populations.

Gibson J, Morton NE, Collins A.

Hum Mol Genet. 2006 Mar 1;15(5):789-95. Epub 2006 Jan 25.

PMID:
16436455
[PubMed - indexed for MEDLINE]
Free Article
12.

Detecting regions of homozygosity to map the cause of recessively inherited disease.

Kijas JW.

Methods Mol Biol. 2013;1019:331-45. doi: 10.1007/978-1-62703-447-0_14.

PMID:
23756898
[PubMed - indexed for MEDLINE]
13.

Genome-wide association studies.

Yang TH, Kon M, DeLisi C.

Methods Mol Biol. 2013;939:233-51. doi: 10.1007/978-1-62703-107-3_15.

PMID:
23192550
[PubMed - indexed for MEDLINE]
14.

Study of regions of extended homozygosity provides a powerful method to explore haplotype structure of human populations.

Curtis D, Vine AE, Knight J.

Ann Hum Genet. 2008 Mar;72(Pt 2):261-78. doi: 10.1111/j.1469-1809.2007.00411.x. Epub 2008 Jan 20.

PMID:
18205893
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Linkage disequilibrium and haplotype homozygosity in population samples genotyped at a high marker density.

Wang H, Lin CH, Service S, Chen Y, Freimer N, Sabatti C; International Collaborative Group on Isolated Populations.

Hum Hered. 2006;62(4):175-89. Epub 2006 Oct 30.

PMID:
17077642
[PubMed - indexed for MEDLINE]
Free Article
16.

Regions of homozygosity and their impact on complex diseases and traits.

Ku CS, Naidoo N, Teo SM, Pawitan Y.

Hum Genet. 2011 Jan;129(1):1-15. doi: 10.1007/s00439-010-0920-6. Epub 2010 Nov 23. Review.

PMID:
21104274
[PubMed - indexed for MEDLINE]
17.

Genome simulation approaches for synthesizing in silico datasets for human genomics.

Ritchie MD, Bush WS.

Adv Genet. 2010;72:1-24. doi: 10.1016/B978-0-12-380862-2.00001-1. Review.

PMID:
21029846
[PubMed - indexed for MEDLINE]
18.

Physiology and Endocrinology Symposium: How single nucleotide polymorphism chips will advance our knowledge of factors controlling puberty and aid in selecting replacement beef females.

Snelling WM, Cushman RA, Fortes MR, Reverter A, Bennett GL, Keele JW, Kuehn LA, McDaneld TG, Thallman RM, Thomas MG.

J Anim Sci. 2012 Apr;90(4):1152-65. doi: 10.2527/jas.2011-4581. Epub 2011 Oct 28.

PMID:
22038989
[PubMed - indexed for MEDLINE]
Free Article
19.

A powerful score test to detect positive selection in genome-wide scans.

Zhong M, Lange K, Papp JC, Fan R.

Eur J Hum Genet. 2010 Oct;18(10):1148-59. doi: 10.1038/ejhg.2010.60. Epub 2010 May 12.

PMID:
20461112
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Inference of relationships in population data using identity-by-descent and identity-by-state.

Stevens EL, Heckenberg G, Roberson ED, Baugher JD, Downey TJ, Pevsner J.

PLoS Genet. 2011 Sep;7(9):e1002287. doi: 10.1371/journal.pgen.1002287. Epub 2011 Sep 22.

PMID:
21966277
[PubMed - indexed for MEDLINE]
Free PMC Article

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