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Results: 1 to 20 of 136

1.

Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum.

Sucgang R, Kuo A, Tian X, Salerno W, Parikh A, Feasley CL, Dalin E, Tu H, Huang E, Barry K, Lindquist E, Shapiro H, Bruce D, Schmutz J, Salamov A, Fey P, Gaudet P, Anjard C, Babu MM, Basu S, Bushmanova Y, van der Wel H, Katoh-Kurasawa M, Dinh C, Coutinho PM, Saito T, Elias M, Schaap P, Kay RR, Henrissat B, Eichinger L, Rivero F, Putnam NH, West CM, Loomis WF, Chisholm RL, Shaulsky G, Strassmann JE, Queller DC, Kuspa A, Grigoriev IV.

Genome Biol. 2011;12(2):R20. doi: 10.1186/gb-2011-12-2-r20. Epub 2011 Feb 28.

PMID:
21356102
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Comparative genomics of the dictyostelids.

Loomis WF.

Methods Mol Biol. 2013;983:39-58. doi: 10.1007/978-1-62703-302-2_3.

PMID:
23494301
[PubMed - indexed for MEDLINE]
3.

The genome of the social amoeba Dictyostelium discoideum.

Eichinger L, Pachebat JA, Glöckner G, Rajandream MA, Sucgang R, Berriman M, Song J, Olsen R, Szafranski K, Xu Q, Tunggal B, Kummerfeld S, Madera M, Konfortov BA, Rivero F, Bankier AT, Lehmann R, Hamlin N, Davies R, Gaudet P, Fey P, Pilcher K, Chen G, Saunders D, Sodergren E, Davis P, Kerhornou A, Nie X, Hall N, Anjard C, Hemphill L, Bason N, Farbrother P, Desany B, Just E, Morio T, Rost R, Churcher C, Cooper J, Haydock S, van Driessche N, Cronin A, Goodhead I, Muzny D, Mourier T, Pain A, Lu M, Harper D, Lindsay R, Hauser H, James K, Quiles M, Madan Babu M, Saito T, Buchrieser C, Wardroper A, Felder M, Thangavelu M, Johnson D, Knights A, Loulseged H, Mungall K, Oliver K, Price C, Quail MA, Urushihara H, Hernandez J, Rabbinowitsch E, Steffen D, Sanders M, Ma J, Kohara Y, Sharp S, Simmonds M, Spiegler S, Tivey A, Sugano S, White B, Walker D, Woodward J, Winckler T, Tanaka Y, Shaulsky G, Schleicher M, Weinstock G, Rosenthal A, Cox EC, Chisholm RL, Gibbs R, Loomis WF, Platzer M, Kay RR, Williams J, Dear PH, Noegel AA, Barrell B, Kuspa A.

Nature. 2005 May 5;435(7038):43-57.

PMID:
15875012
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Conserved developmental transcriptomes in evolutionarily divergent species.

Parikh A, Miranda ER, Katoh-Kurasawa M, Fuller D, Rot G, Zagar L, Curk T, Sucgang R, Chen R, Zupan B, Loomis WF, Kuspa A, Shaulsky G.

Genome Biol. 2010;11(3):R35. doi: 10.1186/gb-2010-11-3-r35. Epub 2010 Mar 17.

PMID:
20236529
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

DictyBase 2013: integrating multiple Dictyostelid species.

Basu S, Fey P, Pandit Y, Dodson R, Kibbe WA, Chisholm RL.

Nucleic Acids Res. 2013 Jan;41(Database issue):D676-83. doi: 10.1093/nar/gks1064. Epub 2012 Nov 20.

PMID:
23172289
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Mitochondrial genome evolution in the social amoebae.

Heidel AJ, Glöckner G.

Mol Biol Evol. 2008 Jul;25(7):1440-50. doi: 10.1093/molbev/msn088. Epub 2008 Apr 15.

PMID:
18413355
[PubMed - indexed for MEDLINE]
Free Article
7.

Evolutionary origin of cAMP-based chemoattraction in the social amoebae.

Alvarez-Curto E, Rozen DE, Ritchie AV, Fouquet C, Baldauf SL, Schaap P.

Proc Natl Acad Sci U S A. 2005 May 3;102(18):6385-90. Epub 2005 Apr 25.

PMID:
15851658
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Segregate or cooperate- a study of the interaction between two species of Dictyostelium.

Jack CN, Ridgeway JG, Mehdiabadi NJ, Jones EI, Edwards TA, Queller DC, Strassmann JE.

BMC Evol Biol. 2008 Oct 24;8:293. doi: 10.1186/1471-2148-8-293.

PMID:
18950497
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics.

Stein LD, Bao Z, Blasiar D, Blumenthal T, Brent MR, Chen N, Chinwalla A, Clarke L, Clee C, Coghlan A, Coulson A, D'Eustachio P, Fitch DH, Fulton LA, Fulton RE, Griffiths-Jones S, Harris TW, Hillier LW, Kamath R, Kuwabara PE, Mardis ER, Marra MA, Miner TL, Minx P, Mullikin JC, Plumb RW, Rogers J, Schein JE, Sohrmann M, Spieth J, Stajich JE, Wei C, Willey D, Wilson RK, Durbin R, Waterston RH.

PLoS Biol. 2003 Nov;1(2):E45. Epub 2003 Nov 17.

PMID:
14624247
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss.

den Bakker HC, Cummings CA, Ferreira V, Vatta P, Orsi RH, Degoricija L, Barker M, Petrauskene O, Furtado MR, Wiedmann M.

BMC Genomics. 2010 Dec 2;11:688. doi: 10.1186/1471-2164-11-688.

PMID:
21126366
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Phylogeography and sexual macrocyst formation in the social amoeba Dictyostelium giganteum.

Mehdiabadi NJ, Kronforst MR, Queller DC, Strassmann JE.

BMC Evol Biol. 2010 Jan 20;10:17. doi: 10.1186/1471-2148-10-17.

PMID:
20089169
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Phylogeny-wide analysis of social amoeba genomes highlights ancient origins for complex intercellular communication.

Heidel AJ, Lawal HM, Felder M, Schilde C, Helps NR, Tunggal B, Rivero F, John U, Schleicher M, Eichinger L, Platzer M, Noegel AA, Schaap P, Glöckner G.

Genome Res. 2011 Nov;21(11):1882-91. doi: 10.1101/gr.121137.111. Epub 2011 Jul 14.

PMID:
21757610
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genetic diversity in the social amoeba Dictyostelium discoideum: population differentiation and cryptic species.

Douglas TE, Kronforst MR, Queller DC, Strassmann JE.

Mol Phylogenet Evol. 2011 Sep;60(3):455-62. doi: 10.1016/j.ympev.2011.05.007. Epub 2011 May 14.

PMID:
21601638
[PubMed - indexed for MEDLINE]
15.

Comparative genomics of Dictyostelium discoideum and Entamoeba histolytica.

Eichinger L, Noegel AA.

Curr Opin Microbiol. 2005 Oct;8(5):606-11. Review.

PMID:
16125444
[PubMed - indexed for MEDLINE]
16.

Genome trees constructed using five different approaches suggest new major bacterial clades.

Wolf YI, Rogozin IB, Grishin NV, Tatusov RL, Koonin EV.

BMC Evol Biol. 2001 Oct 20;1:8.

PMID:
11734060
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Conserved gene regulatory function of the carboxy-terminal domain of dictyostelid C-module-binding factor.

Schmith A, Groth M, Ratka J, Gatz S, Spaller T, Siol O, Glöckner G, Winckler T.

Eukaryot Cell. 2013 Mar;12(3):460-8. doi: 10.1128/EC.00329-12. Epub 2013 Jan 25.

PMID:
23355006
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Variation, sex, and social cooperation: molecular population genetics of the social amoeba Dictyostelium discoideum.

Flowers JM, Li SI, Stathos A, Saxer G, Ostrowski EA, Queller DC, Strassmann JE, Purugganan MD.

PLoS Genet. 2010 Jul 1;6(7):e1001013. doi: 10.1371/journal.pgen.1001013.

PMID:
20617172
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The Genome of Dictyostelium discoideum.

Kuspa A, Loomis WF.

Methods Mol Biol. 2006;346:15-30. Review.

PMID:
16957282
[PubMed - indexed for MEDLINE]
20.

Amino acid repeats cause extraordinary coding sequence variation in the social amoeba Dictyostelium discoideum.

Scala C, Tian X, Mehdiabadi NJ, Smith MH, Saxer G, Stephens K, Buzombo P, Strassmann JE, Queller DC.

PLoS One. 2012;7(9):e46150. doi: 10.1371/journal.pone.0046150. Epub 2012 Sep 28.

PMID:
23029418
[PubMed - indexed for MEDLINE]
Free PMC Article

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