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Results: 1 to 20 of 102

1.

Bringing order to protein disorder through comparative genomics and genetic interactions.

Bellay J, Han S, Michaut M, Kim T, Costanzo M, Andrews BJ, Boone C, Bader GD, Myers CL, Kim PM.

Genome Biol. 2011;12(2):R14. doi: 10.1186/gb-2011-12-2-r14. Epub 2011 Feb 16.

PMID:
21324131
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The unfoldomics decade: an update on intrinsically disordered proteins.

Dunker AK, Oldfield CJ, Meng J, Romero P, Yang JY, Chen JW, Vacic V, Obradovic Z, Uversky VN.

BMC Genomics. 2008 Sep 16;9 Suppl 2:S1. doi: 10.1186/1471-2164-9-S2-S1.

PMID:
18831774
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).

Foffi G, Pastore A, Piazza F, Temussi PA.

Phys Biol. 2013 Aug 2;10(4):040301. [Epub ahead of print]

PMID:
23912807
[PubMed - as supplied by publisher]
4.

Distinct types of disorder in the human proteome: functional implications for alternative splicing.

Colak R, Kim T, Michaut M, Sun M, Irimia M, Bellay J, Myers CL, Blencowe BJ, Kim PM.

PLoS Comput Biol. 2013 Apr;9(4):e1003030. doi: 10.1371/journal.pcbi.1003030. Epub 2013 Apr 25.

PMID:
23633940
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Conservation of intrinsic disorder in protein domains and families: I. A database of conserved predicted disordered regions.

Chen JW, Romero P, Uversky VN, Dunker AK.

J Proteome Res. 2006 Apr;5(4):879-87.

PMID:
16602695
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Bioinformatical approaches to characterize intrinsically disordered/unstructured proteins.

Dosztányi Z, Mészáros B, Simon I.

Brief Bioinform. 2010 Mar;11(2):225-43. doi: 10.1093/bib/bbp061. Epub 2009 Dec 10. Review.

PMID:
20007729
[PubMed - indexed for MEDLINE]
Free Article
7.

Conservation of intrinsic disorder in protein domains and families: II. functions of conserved disorder.

Chen JW, Romero P, Uversky VN, Dunker AK.

J Proteome Res. 2006 Apr;5(4):888-98.

PMID:
16602696
[PubMed - indexed for MEDLINE]
Free PMC Article
8.
9.

Editorial: protein systems biology: method, regulation, and network.

Chen Q, Chen M.

Curr Protein Pept Sci. 2014;15(6):519-21.

PMID:
25135673
[PubMed - in process]
10.

Comprehensive repertoire of foldable regions within whole genomes.

Faure G, Callebaut I.

PLoS Comput Biol. 2013 Oct;9(10):e1003280. doi: 10.1371/journal.pcbi.1003280. Epub 2013 Oct 24.

PMID:
24204229
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the Protein Data Bank.

Bastolla U, Porto M, Roman HE, Vendruscolo M.

BMC Evol Biol. 2006 May 31;6:43.

PMID:
16737532
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Automatic identification of highly conserved family regions and relationships in genome wide datasets including remote protein sequences.

Doğan T, Karaçalı B.

PLoS One. 2013 Sep 12;8(9):e75458. doi: 10.1371/journal.pone.0075458. eCollection 2013.

PMID:
24069417
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Attributes of short linear motifs.

Davey NE, Van Roey K, Weatheritt RJ, Toedt G, Uyar B, Altenberg B, Budd A, Diella F, Dinkel H, Gibson TJ.

Mol Biosyst. 2012 Jan;8(1):268-81. doi: 10.1039/c1mb05231d. Epub 2011 Sep 12.

PMID:
21909575
[PubMed - indexed for MEDLINE]
14.

A creature with a hundred waggly tails: intrinsically disordered proteins in the ribosome.

Peng Z, Oldfield CJ, Xue B, Mizianty MJ, Dunker AK, Kurgan L, Uversky VN.

Cell Mol Life Sci. 2014 Apr;71(8):1477-504. doi: 10.1007/s00018-013-1446-6. Epub 2013 Aug 13.

PMID:
23942625
[PubMed - indexed for MEDLINE]
16.

Genome-scale prediction of proteins with long intrinsically disordered regions.

Peng Z, Mizianty MJ, Kurgan L.

Proteins. 2014 Jan;82(1):145-58. doi: 10.1002/prot.24348. Epub 2013 Sep 17.

PMID:
23798504
[PubMed - indexed for MEDLINE]
17.

Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins.

Xie H, Vucetic S, Iakoucheva LM, Oldfield CJ, Dunker AK, Obradovic Z, Uversky VN.

J Proteome Res. 2007 May;6(5):1917-32. Epub 2007 Mar 29.

PMID:
17391016
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Chemical composition is maintained in poorly conserved intrinsically disordered regions and suggests a means for their classification.

Moesa HA, Wakabayashi S, Nakai K, Patil A.

Mol Biosyst. 2012 Oct 30;8(12):3262-73. doi: 10.1039/c2mb25202c.

PMID:
23076520
[PubMed - indexed for MEDLINE]
19.

Comparative genomics reveals long, evolutionarily conserved, low-complexity islands in yeast proteins.

Romov PA, Li F, Lipke PN, Epstein SL, Qiu WG.

J Mol Evol. 2006 Sep;63(3):415-25. Epub 2006 Aug 21.

PMID:
16927006
[PubMed - indexed for MEDLINE]
20.

Intrinsically disordered regions of p53 family are highly diversified in evolution.

Xue B, Brown CJ, Dunker AK, Uversky VN.

Biochim Biophys Acta. 2013 Apr;1834(4):725-38. doi: 10.1016/j.bbapap.2013.01.012. Epub 2013 Jan 22.

PMID:
23352836
[PubMed - indexed for MEDLINE]
Free PMC Article

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