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Results: 1 to 20 of 90

1.

Considerations for the inclusion of 2x mammalian genomes in phylogenetic analyses.

Vilella AJ, Birney E, Flicek P, Herrero J.

Genome Biol. 2011;12(2):401. doi: 10.1186/gb-2011-12-2-401. Epub 2011 Feb 21. No abstract available.

PMID:
21320298
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

2x genomes--depth does matter.

Milinkovitch MC, Helaers R, Depiereux E, Tzika AC, Gabaldón T.

Genome Biol. 2010;11(2):R16. doi: 10.1186/gb-2010-11-2-r16. Epub 2010 Feb 9.

PMID:
20144222
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Mammalian evolution and biomedicine: new views from phylogeny.

Springer MS, Murphy WJ.

Biol Rev Camb Philos Soc. 2007 Aug;82(3):375-92. Review. Erratum in: Biol Rev Camb Philos Soc. 2007 Nov;82(4):699.

PMID:
17624960
[PubMed - indexed for MEDLINE]
4.

The origin and evolution of ARGFX homeobox loci in mammalian radiation.

Li G, Holland PW.

BMC Evol Biol. 2010 Jun 17;10:182. doi: 10.1186/1471-2148-10-182.

PMID:
20565723
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Neogastropod phylogenetic relationships based on entire mitochondrial genomes.

Cunha RL, Grande C, Zardoya R.

BMC Evol Biol. 2009 Aug 23;9:210. doi: 10.1186/1471-2148-9-210.

PMID:
19698157
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Recent dermatophyte divergence revealed by comparative and phylogenetic analysis of mitochondrial genomes.

Wu Y, Yang J, Yang F, Liu T, Leng W, Chu Y, Jin Q.

BMC Genomics. 2009 May 21;10:238. doi: 10.1186/1471-2164-10-238.

PMID:
19457268
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

An EST screen from the annelid Pomatoceros lamarckii reveals patterns of gene loss and gain in animals.

Takahashi T, McDougall C, Troscianko J, Chen WC, Jayaraman-Nagarajan A, Shimeld SM, Ferrier DE.

BMC Evol Biol. 2009 Sep 25;9:240. doi: 10.1186/1471-2148-9-240.

PMID:
19781084
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Comparative study of human mitochondrial proteome reveals extensive protein subcellular relocalization after gene duplications.

Wang X, Huang Y, Lavrov DV, Gu X.

BMC Evol Biol. 2009 Nov 30;9:275. doi: 10.1186/1471-2148-9-275.

PMID:
19948060
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genetic diversity, molecular phylogeny and selection evidence of the silkworm mitochondria implicated by complete resequencing of 41 genomes.

Li D, Guo Y, Shao H, Tellier LC, Wang J, Xiang Z, Xia Q.

BMC Evol Biol. 2010 Mar 24;10:81. doi: 10.1186/1471-2148-10-81.

PMID:
20334646
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Comparative mitogenomics of Braconidae (Insecta: Hymenoptera) and the phylogenetic utility of mitochondrial genomes with special reference to Holometabolous insects.

Wei SJ, Shi M, Sharkey MJ, van Achterberg C, Chen XX.

BMC Genomics. 2010 Jun 11;11:371. doi: 10.1186/1471-2164-11-371.

PMID:
20537196
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Comparative genomic and phylogenetic analyses reveal the evolution of the core two-component signal transduction systems in enterobacteria.

Qi M, Sun FJ, Caetano-Anollés G, Zhao Y.

J Mol Evol. 2010 Feb;70(2):167-80. doi: 10.1007/s00239-009-9318-2. Epub 2010 Jan 5.

PMID:
20049425
[PubMed - indexed for MEDLINE]
12.

Different phylogenomic approaches to resolve the evolutionary relationships among model fish species.

Negrisolo E, Kuhl H, Forcato C, Vitulo N, Reinhardt R, Patarnello T, Bargelloni L.

Mol Biol Evol. 2010 Dec;27(12):2757-74. doi: 10.1093/molbev/msq165. Epub 2010 Jun 29.

PMID:
20591844
[PubMed - indexed for MEDLINE]
Free Article
13.

Comparative genomics of vesicomyid clam (Bivalvia: Mollusca) chemosynthetic symbionts.

Newton IL, Girguis PR, Cavanaugh CM.

BMC Genomics. 2008 Dec 4;9:585. doi: 10.1186/1471-2164-9-585.

PMID:
19055818
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Comparison of seven Crassostrea mitogenomes and phylogenetic analyses.

Wu X, Xu X, Yu Z, Wei Z, Xia J.

Mol Phylogenet Evol. 2010 Oct;57(1):448-54. doi: 10.1016/j.ympev.2010.05.029. Epub 2010 Jun 8. No abstract available.

PMID:
20566320
[PubMed - indexed for MEDLINE]
15.

Coevolution of aah: a dps-like gene with the host bacterium revealed by comparative genomic analysis.

Ping L, Platzer M, Wen G, Delaroque N.

ScientificWorldJournal. 2012;2012:504905. doi: 10.1100/2012/504905. Epub 2012 Feb 1.

PMID:
22454608
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Use of a cytogenetic whole-genome comparison to resolve phylogenetic relationships among three species: implications for mammalian systematics and conservation biology.

Yu HT, Ma GC, Lee DJ, Chin SC, Chen TL, Tsao HS, Lin WH, Wu SH, Lin CC, Chen M.

Theriogenology. 2012 May;77(8):1615-23. doi: 10.1016/j.theriogenology.2011.12.006. Epub 2011 Dec 20.

PMID:
22192390
[PubMed - indexed for MEDLINE]
17.

Evolution of mammalian genome organization inferred from comparative gene mapping.

Murphy WJ, Stanyon R, O'Brien SJ.

Genome Biol. 2001;2(6):REVIEWS0005. Epub 2001 Jun 5. Review.

PMID:
11423011
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Evolution of the mitochondrial genome in snakes: gene rearrangements and phylogenetic relationships.

Yan J, Li H, Zhou K.

BMC Genomics. 2008 Nov 28;9:569. doi: 10.1186/1471-2164-9-569.

PMID:
19038056
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Complete chloroplast genome sequence of a tree fern Alsophila spinulosa: insights into evolutionary changes in fern chloroplast genomes.

Gao L, Yi X, Yang YX, Su YJ, Wang T.

BMC Evol Biol. 2009 Jun 11;9:130. doi: 10.1186/1471-2148-9-130.

PMID:
19519899
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Array Comparative Genomic Hybridizations: assessing the ability to recapture evolutionary relationships using an in silico approach.

Gilbert LB, Chae L, Kasuga T, Taylor JW.

BMC Genomics. 2011 Sep 21;12:456. doi: 10.1186/1471-2164-12-456.

PMID:
21936922
[PubMed - indexed for MEDLINE]
Free PMC Article

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