Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 116

1.

Strong functional patterns in the evolution of eukaryotic genomes revealed by the reconstruction of ancestral protein domain repertoires.

Zmasek CM, Godzik A.

Genome Biol. 2011;12(1):R4. doi: 10.1186/gb-2011-12-1-r4. Epub 2011 Jan 17.

PMID:
21241503
[PubMed - indexed for MEDLINE]
Free PMC Article
2.
3.

A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.

Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Rogozin IB, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA.

Genome Biol. 2004;5(2):R7. Epub 2004 Jan 15.

PMID:
14759257
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Origin and evolution of spliceosomal introns.

Rogozin IB, Carmel L, Csuros M, Koonin EV.

Biol Direct. 2012 Apr 16;7:11. doi: 10.1186/1745-6150-7-11. Review.

PMID:
22507701
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Eleven ancestral gene families lost in mammals and vertebrates while otherwise universally conserved in animals.

Danchin EG, Gouret P, Pontarotti P.

BMC Evol Biol. 2006 Jan 18;6:5.

PMID:
16420703
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Evolutionary versatility of eukaryotic protein domains revealed by their bigram networks.

Xie X, Jin J, Mao Y.

BMC Evol Biol. 2011 Aug 18;11:242. doi: 10.1186/1471-2148-11-242.

PMID:
21849086
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

This Déjà vu feeling--analysis of multidomain protein evolution in eukaryotic genomes.

Zmasek CM, Godzik A.

PLoS Comput Biol. 2012;8(11):e1002701. doi: 10.1371/journal.pcbi.1002701. Epub 2012 Nov 15.

PMID:
23166479
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The proteomic complexity and rise of the primordial ancestor of diversified life.

Kim KM, Caetano-Anollés G.

BMC Evol Biol. 2011 May 25;11:140. doi: 10.1186/1471-2148-11-140.

PMID:
21612591
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Global patterns of protein domain gain and loss in superkingdoms.

Nasir A, Kim KM, Caetano-Anollés G.

PLoS Comput Biol. 2014 Jan 30;10(1):e1003452. doi: 10.1371/journal.pcbi.1003452. eCollection 2014 Jan.

PMID:
24499935
[PubMed - in process]
Free PMC Article
10.

A genomic survey of HECT ubiquitin ligases in eukaryotes reveals independent expansions of the HECT system in several lineages.

Grau-Bové X, Sebé-Pedrós A, Ruiz-Trillo I.

Genome Biol Evol. 2013;5(5):833-47. doi: 10.1093/gbe/evt052.

PMID:
23563970
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Evolution of the PWWP-domain encoding genes in the plant and animal lineages.

Alvarez-Venegas R, Avramova Z.

BMC Evol Biol. 2012 Jun 26;12:101.

PMID:
22734652
[PubMed - indexed for MEDLINE]
Free PMC Article
12.
13.

Models of gene gain and gene loss for probabilistic reconstruction of gene content in the last universal common ancestor of life.

Kannan L, Li H, Rubinstein B, Mushegian A.

Biol Direct. 2013 Dec 19;8:32. doi: 10.1186/1745-6150-8-32.

PMID:
24354654
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Patterns of kinesin evolution reveal a complex ancestral eukaryote with a multifunctional cytoskeleton.

Wickstead B, Gull K, Richards TA.

BMC Evol Biol. 2010 Apr 27;10:110. doi: 10.1186/1471-2148-10-110.

PMID:
20423470
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Evolutionary history of the poly(ADP-ribose) polymerase gene family in eukaryotes.

Citarelli M, Teotia S, Lamb RS.

BMC Evol Biol. 2010 Oct 13;10:308. doi: 10.1186/1471-2148-10-308.

PMID:
20942953
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A detailed history of intron-rich eukaryotic ancestors inferred from a global survey of 100 complete genomes.

Csuros M, Rogozin IB, Koonin EV.

PLoS Comput Biol. 2011 Sep;7(9):e1002150. doi: 10.1371/journal.pcbi.1002150. Epub 2011 Sep 15.

PMID:
21935348
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The evolutionary history of protein fold families and proteomes confirms that the archaeal ancestor is more ancient than the ancestors of other superkingdoms.

Kim KM, Caetano-Anollés G.

BMC Evol Biol. 2012 Jan 27;12:13. doi: 10.1186/1471-2148-12-13.

PMID:
22284070
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Whence genes in pieces: reconstruction of the exon-intron gene structures of the last eukaryotic common ancestor and other ancestral eukaryotes.

Koonin EV, Csuros M, Rogozin IB.

Wiley Interdiscip Rev RNA. 2013 Jan-Feb;4(1):93-105. doi: 10.1002/wrna.1143. Epub 2012 Nov 8. Review.

PMID:
23139082
[PubMed - indexed for MEDLINE]
19.

An evolutionary network of genes present in the eukaryote common ancestor polls genomes on eukaryotic and mitochondrial origin.

Thiergart T, Landan G, Schenk M, Dagan T, Martin WF.

Genome Biol Evol. 2012;4(4):466-85. doi: 10.1093/gbe/evs018. Epub 2012 Feb 21.

PMID:
22355196
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods.

Ruano-Rubio V, Poch O, Thompson JD.

BMC Bioinformatics. 2009 Nov 24;10:383. doi: 10.1186/1471-2105-10-383.

PMID:
19930674
[PubMed - indexed for MEDLINE]
Free PMC Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk