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Results: 1 to 20 of 100

1.

The Genomic HyperBrowser: inferential genomics at the sequence level.

Sandve GK, Gundersen S, Rydbeck H, Glad IK, Holden L, Holden M, Liestøl K, Clancy T, Ferkingstad E, Johansen M, Nygaard V, Tøstesen E, Frigessi A, Hovig E.

Genome Biol. 2010;11(12):R121. doi: 10.1186/gb-2010-11-12-r121. Epub 2010 Dec 23.

PMID:
21182759
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The Genomic HyperBrowser: an analysis web server for genome-scale data.

Sandve GK, Gundersen S, Johansen M, Glad IK, Gunathasan K, Holden L, Holden M, Liestøl K, Nygård S, Nygaard V, Paulsen J, Rydbeck H, Trengereid K, Clancy T, Drabløs F, Ferkingstad E, Kalas M, Lien T, Rye MB, Frigessi A, Hovig E.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W133-41. doi: 10.1093/nar/gkt342. Epub 2013 Apr 30.

PMID:
23632163
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

A dictionary based informational genome analysis.

Castellini A, Franco G, Manca V.

BMC Genomics. 2012 Sep 17;13:485. doi: 10.1186/1471-2164-13-485.

PMID:
22985068
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

GenomeGraphs: integrated genomic data visualization with R.

Durinck S, Bullard J, Spellman PT, Dudoit S.

BMC Bioinformatics. 2009 Jan 6;10:2. doi: 10.1186/1471-2105-10-2.

PMID:
19123956
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Current bioinformatics tools in genomic biomedical research (Review).

Teufel A, Krupp M, Weinmann A, Galle PR.

Int J Mol Med. 2006 Jun;17(6):967-73. Review.

PMID:
16685403
[PubMed - indexed for MEDLINE]
6.

Tabix: fast retrieval of sequence features from generic TAB-delimited files.

Li H.

Bioinformatics. 2011 Mar 1;27(5):718-9. doi: 10.1093/bioinformatics/btq671. Epub 2011 Jan 5.

PMID:
21208982
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Advances in sequence analysis.

Califano A.

Curr Opin Struct Biol. 2001 Jun;11(3):330-3. Review.

PMID:
11406383
[PubMed - indexed for MEDLINE]
8.

Sequence assembly.

Scheibye-Alsing K, Hoffmann S, Frankel A, Jensen P, Stadler PF, Mang Y, Tommerup N, Gilchrist MJ, Nygård AB, Cirera S, Jørgensen CB, Fredholm M, Gorodkin J.

Comput Biol Chem. 2009 Apr;33(2):121-36. doi: 10.1016/j.compbiolchem.2008.11.003. Epub 2008 Dec 6. Review.

PMID:
19152793
[PubMed - indexed for MEDLINE]
9.

The differential disease regulome.

Sandve GK, Gundersen S, Rydbeck H, Glad IK, Holden L, Holden M, Liestøl K, Clancy T, Drabløs F, Ferkingstad E, Johansen M, Nygaard V, Tøstesen E, Frigessi A, Hovig E.

BMC Genomics. 2011 Jul 7;12:353. doi: 10.1186/1471-2164-12-353.

PMID:
21736759
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genome comparison without alignment using shortest unique substrings.

Haubold B, Pierstorff N, Möller F, Wiehe T.

BMC Bioinformatics. 2005 May 23;6:123.

PMID:
15910684
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

CoGenT++: an extensive and extensible data environment for computational genomics.

Goldovsky L, Janssen P, Ahrén D, Audit B, Cases I, Darzentas N, Enright AJ, López-Bigas N, Peregrin-Alvarez JM, Smith M, Tsoka S, Kunin V, Ouzounis CA.

Bioinformatics. 2005 Oct 1;21(19):3806-10.

PMID:
16216832
[PubMed - indexed for MEDLINE]
Free Article
12.

Computational method for temporal pattern discovery in biomedical genomic databases.

Rafiq MI, O'Connor MJ, Das AK.

Proc IEEE Comput Syst Bioinform Conf. 2005:362-5.

PMID:
16447993
[PubMed - indexed for MEDLINE]
13.

xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features.

Schlueter SD, Wilkerson MD, Dong Q, Brendel V.

Genome Biol. 2006;7(11):R111.

PMID:
17116260
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

EpiGRAPH: user-friendly software for statistical analysis and prediction of (epi)genomic data.

Bock C, Halachev K, Büch J, Lengauer T.

Genome Biol. 2009 Feb 10;10(2):R14. doi: 10.1186/gb-2009-10-2-r14.

PMID:
19208250
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs.

Risueño A, Fontanillo C, Dinger ME, De Las Rivas J.

BMC Bioinformatics. 2010 Apr 29;11:221. doi: 10.1186/1471-2105-11-221.

PMID:
20429936
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

New strategy for the representation and the integration of biomolecular knowledge at a cellular scale.

Barriot R, Poix J, Groppi A, Barré A, Goffard N, Sherman D, Dutour I, de Daruvar A.

Nucleic Acids Res. 2004 Jul 7;32(12):3581-9. Print 2004.

PMID:
15240831
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Rainbow: a tool for large-scale whole-genome sequencing data analysis using cloud computing.

Zhao S, Prenger K, Smith L, Messina T, Fan H, Jaeger E, Stephens S.

BMC Genomics. 2013 Jun 27;14:425. doi: 10.1186/1471-2164-14-425.

PMID:
23802613
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing.

Horner DS, Pavesi G, Castrignanò T, De Meo PD, Liuni S, Sammeth M, Picardi E, Pesole G.

Brief Bioinform. 2010 Mar;11(2):181-97. doi: 10.1093/bib/bbp046. Epub 2009 Oct 27. Review.

PMID:
19864250
[PubMed - indexed for MEDLINE]
Free Article
19.

Savant: genome browser for high-throughput sequencing data.

Fiume M, Williams V, Brook A, Brudno M.

Bioinformatics. 2010 Aug 15;26(16):1938-44. doi: 10.1093/bioinformatics/btq332. Epub 2010 Jun 20.

PMID:
20562449
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

synbreed: a framework for the analysis of genomic prediction data using R.

Wimmer V, Albrecht T, Auinger HJ, Schön CC.

Bioinformatics. 2012 Aug 1;28(15):2086-7. doi: 10.1093/bioinformatics/bts335. Epub 2012 Jun 10.

PMID:
22689388
[PubMed - indexed for MEDLINE]
Free Article

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