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Results: 1 to 20 of 82

1.

Contribution of histone sequence preferences to nucleosome organization: proposed definitions and methodology.

Kaplan N, Hughes TR, Lieb JD, Widom J, Segal E.

Genome Biol. 2010;11(11):140. doi: 10.1186/gb-2010-11-11-140. Epub 2010 Nov 30.

PMID:
21118582
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Are nucleosome positions in vivo primarily determined by histone-DNA sequence preferences?

Stein A, Takasuka TE, Collings CK.

Nucleic Acids Res. 2010 Jan;38(3):709-19. doi: 10.1093/nar/gkp1043. Epub 2009 Nov 24.

PMID:
19934265
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Global dynamics of newly constructed oligonucleosomes of conventional and variant H2A.Z histone.

Ramaswamy A, Ioshikhes I.

BMC Struct Biol. 2007 Nov 8;7:76.

PMID:
17996059
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

[Structure of chromatin. I: Levels of DNA organization in the nucleus; nucleosome and chromatin fibres].

Santisteban MS.

Pathol Biol (Paris). 1994 Nov;42(9):868-83. French.

PMID:
7753597
[PubMed - indexed for MEDLINE]
5.

Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes.

Tolstorukov MY, Kharchenko PV, Goldman JA, Kingston RE, Park PJ.

Genome Res. 2009 Jun;19(6):967-77. doi: 10.1101/gr.084830.108. Epub 2009 Feb 26.

PMID:
19246569
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Chromatin assembly: a basic recipe with various flavours.

Polo SE, Almouzni G.

Curr Opin Genet Dev. 2006 Apr;16(2):104-11. Epub 2006 Feb 28. Review.

PMID:
16504499
[PubMed - indexed for MEDLINE]
7.

DNA sequence-dependent contributions of core histone tails to nucleosome stability: differential effects of acetylation and proteolytic tail removal.

Widlund HR, Vitolo JM, Thiriet C, Hayes JJ.

Biochemistry. 2000 Apr 4;39(13):3835-41.

PMID:
10736184
[PubMed - indexed for MEDLINE]
8.

Weakly positioned nucleosomes enhance the transcriptional competency of chromatin.

Belch Y, Yang J, Liu Y, Malkaram SA, Liu R, Riethoven JJ, Ladunga I.

PLoS One. 2010 Sep 24;5(9):e12984. doi: 10.1371/journal.pone.0012984.

PMID:
20886052
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Sequence-dependent nucleosome positioning.

Chung HR, Vingron M.

J Mol Biol. 2009 Mar 13;386(5):1411-22. doi: 10.1016/j.jmb.2008.11.049. Epub 2008 Dec 3.

PMID:
19070622
[PubMed - indexed for MEDLINE]
10.

Multiscale modeling of nucleosome dynamics.

Sharma S, Ding F, Dokholyan NV.

Biophys J. 2007 Mar 1;92(5):1457-70. Epub 2006 Dec 1.

PMID:
17142268
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Histone chaperones and nucleosome assembly.

Akey CW, Luger K.

Curr Opin Struct Biol. 2003 Feb;13(1):6-14. Review.

PMID:
12581654
[PubMed - indexed for MEDLINE]
12.

Structural dynamics of nucleosome core particle: comparison with nucleosomes containing histone variants.

Ramaswamy A, Bahar I, Ioshikhes I.

Proteins. 2005 Feb 15;58(3):683-96.

PMID:
15624215
[PubMed - indexed for MEDLINE]
13.

Nucleosome arrays reveal the two-start organization of the chromatin fiber.

Dorigo B, Schalch T, Kulangara A, Duda S, Schroeder RR, Richmond TJ.

Science. 2004 Nov 26;306(5701):1571-3.

PMID:
15567867
[PubMed - indexed for MEDLINE]
Free Article
14.

The core histone tail domains contribute to sequence-dependent nucleosome positioning.

Yang Z, Zheng C, Hayes JJ.

J Biol Chem. 2007 Mar 16;282(11):7930-8. Epub 2007 Jan 17.

PMID:
17234628
[PubMed - indexed for MEDLINE]
Free Article
15.

Sin mutations alter inherent nucleosome mobility.

Flaus A, Rencurel C, Ferreira H, Wiechens N, Owen-Hughes T.

EMBO J. 2004 Jan 28;23(2):343-53. Epub 2004 Jan 15.

PMID:
14726954
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Comprehensive structural analysis of mutant nucleosomes containing lysine to glutamine (KQ) substitutions in the H3 and H4 histone-fold domains.

Iwasaki W, Tachiwana H, Kawaguchi K, Shibata T, Kagawa W, Kurumizaka H.

Biochemistry. 2011 Sep 13;50(36):7822-32. doi: 10.1021/bi201021h. Epub 2011 Aug 17.

PMID:
21812398
[PubMed - indexed for MEDLINE]
17.

Histone H2A ubiquitination does not preclude histone H1 binding, but it facilitates its association with the nucleosome.

Jason LJ, Finn RM, Lindsey G, AusiĆ³ J.

J Biol Chem. 2005 Feb 11;280(6):4975-82. Epub 2004 Nov 16.

PMID:
15546875
[PubMed - indexed for MEDLINE]
Free Article
18.

Sin mutations of histone H3: influence on nucleosome core structure and function.

Kurumizaka H, Wolffe AP.

Mol Cell Biol. 1997 Dec;17(12):6953-69.

PMID:
9372928
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

H2A.Z and H3.3 histone variants affect nucleosome structure: biochemical and biophysical studies.

Thakar A, Gupta P, Ishibashi T, Finn R, Silva-Moreno B, Uchiyama S, Fukui K, Tomschik M, Ausio J, Zlatanova J.

Biochemistry. 2009 Nov 24;48(46):10852-7. doi: 10.1021/bi901129e.

PMID:
19856965
[PubMed - indexed for MEDLINE]
20.

Rules and regulation in the primary structure of chromatin.

Rando OJ, Ahmad K.

Curr Opin Cell Biol. 2007 Jun;19(3):250-6. Epub 2007 Apr 26. Review.

PMID:
17466507
[PubMed - indexed for MEDLINE]

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