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Results: 1 to 20 of 97

1.

Patient-oriented gene set analysis for cancer mutation data.

Boca SM, Kinzler KW, Velculescu VE, Vogelstein B, Parmigiani G.

Genome Biol. 2010;11(11):R112. doi: 10.1186/gb-2010-11-11-r112. Epub 2010 Nov 23.

PMID:
21092299
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

CAERUS: predicting CAncER oUtcomeS using relationship between protein structural information, protein networks, gene expression data, and mutation data.

Zhang KX, Ouellette BF.

PLoS Comput Biol. 2011 Mar;7(3):e1001114. doi: 10.1371/journal.pcbi.1001114. Epub 2011 Mar 31.

PMID:
21483478
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Using bioinformatics and genome analysis for new therapeutic interventions.

Mount DW, Pandey R.

Mol Cancer Ther. 2005 Oct;4(10):1636-43. Review.

PMID:
16227414
[PubMed - indexed for MEDLINE]
Free Article
4.

DrGaP: a powerful tool for identifying driver genes and pathways in cancer sequencing studies.

Hua X, Xu H, Yang Y, Zhu J, Liu P, Lu Y.

Am J Hum Genet. 2013 Sep 5;93(3):439-51. doi: 10.1016/j.ajhg.2013.07.003. Epub 2013 Aug 15.

PMID:
23954162
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

PAGE: parametric analysis of gene set enrichment.

Kim SY, Volsky DJ.

BMC Bioinformatics. 2005 Jun 8;6:144.

PMID:
15941488
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Building interpretable fuzzy models for high dimensional data analysis in cancer diagnosis.

Wang Z, Palade V.

BMC Genomics. 2011;12 Suppl 2:S5. doi: 10.1186/1471-2164-12-S2-S5. Epub 2011 Jul 27.

PMID:
21989191
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Bioinformatics strategies for translating genome-wide expression analyses into clinically useful cancer markers.

Rhodes DR, Chinnaiyan AM.

Ann N Y Acad Sci. 2004 May;1020:32-40. Review.

PMID:
15208181
[PubMed - indexed for MEDLINE]
8.

Systematic deciphering of cancer genome networks.

Fendler B, Atwal G.

Yale J Biol Med. 2012 Sep;85(3):339-45. Epub 2012 Sep 25. Review.

PMID:
23012582
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Gene expression analysis in clear cell renal cell carcinoma using gene set enrichment analysis for biostatistical management.

Maruschke M, Reuter D, Koczan D, Hakenberg OW, Thiesen HJ.

BJU Int. 2011 Jul;108(2 Pt 2):E29-35. doi: 10.1111/j.1464-410X.2010.09794.x. Epub 2011 Mar 16.

PMID:
21435154
[PubMed - indexed for MEDLINE]
11.

Improving gene set analysis of microarray data by SAM-GS.

Dinu I, Potter JD, Mueller T, Liu Q, Adewale AJ, Jhangri GS, Einecke G, Famulski KS, Halloran P, Yasui Y.

BMC Bioinformatics. 2007 Jul 5;8:242.

PMID:
17612399
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Handling missing DNA microarray data by kriging estimators.

Pham TD.

Int J Bioinform Res Appl. 2006;2(2):177-92.

PMID:
18048161
[PubMed - indexed for MEDLINE]
13.

Integrating genetic and gene expression evidence into genome-wide association analysis of gene sets.

Xiong Q, Ancona N, Hauser ER, Mukherjee S, Furey TS.

Genome Res. 2012 Feb;22(2):386-97. doi: 10.1101/gr.124370.111. Epub 2011 Sep 22. Erratum in: Genome Res. 2013 May;23(5):905.

PMID:
21940837
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The genomic landscapes of human breast and colorectal cancers.

Wood LD, Parsons DW, Jones S, Lin J, Sjöblom T, Leary RJ, Shen D, Boca SM, Barber T, Ptak J, Silliman N, Szabo S, Dezso Z, Ustyanksky V, Nikolskaya T, Nikolsky Y, Karchin R, Wilson PA, Kaminker JS, Zhang Z, Croshaw R, Willis J, Dawson D, Shipitsin M, Willson JK, Sukumar S, Polyak K, Park BH, Pethiyagoda CL, Pant PV, Ballinger DG, Sparks AB, Hartigan J, Smith DR, Suh E, Papadopoulos N, Buckhaults P, Markowitz SD, Parmigiani G, Kinzler KW, Velculescu VE, Vogelstein B.

Science. 2007 Nov 16;318(5853):1108-13. Epub 2007 Oct 11.

PMID:
17932254
[PubMed - indexed for MEDLINE]
Free Article
15.

Design and analysis issues in genome-wide somatic mutation studies of cancer.

Parmigiani G, Boca S, Lin J, Kinzler KW, Velculescu V, Vogelstein B.

Genomics. 2009 Jan;93(1):17-21. doi: 10.1016/j.ygeno.2008.07.005. Epub 2008 Aug 23. Review.

PMID:
18692126
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Genome wide identification of recessive cancer genes by combinatorial mutation analysis.

Volinia S, Mascellani N, Marchesini J, Veronese A, Ormondroyd E, Alder H, Palatini J, Negrini M, Croce CM.

PLoS One. 2008;3(10):e3380. doi: 10.1371/journal.pone.0003380. Epub 2008 Oct 10.

PMID:
18846217
[PubMed - indexed for MEDLINE]
Free PMC Article
17.
18.

A gene sets approach for identifying prognostic gene signatures for outcome prediction.

Kim SY, Kim YS.

BMC Genomics. 2008 Apr 16;9:177. doi: 10.1186/1471-2164-9-177.

PMID:
18416850
[PubMed - indexed for MEDLINE]
Free PMC Article
19.
20.

Molecular profiling techniques and bioinformatics in cancer research.

Manning AT, Garvin JT, Shahbazi RI, Miller N, McNeill RE, Kerin MJ.

Eur J Surg Oncol. 2007 Apr;33(3):255-65. Epub 2006 Oct 27. Review.

PMID:
17071042
[PubMed - indexed for MEDLINE]

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