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Results: 1 to 20 of 148

1.

Immunostaining of modified histones defines high-level features of the human metaphase epigenome.

Terrenoire E, McRonald F, Halsall JA, Page P, Illingworth RS, Taylor AM, Davison V, O'Neill LP, Turner BM.

Genome Biol. 2010;11(11):R110. doi: 10.1186/gb-2010-11-11-r110. Epub 2010 Nov 15.

PMID:
21078160
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Histone modifications for human epigenome analysis.

Kimura H.

J Hum Genet. 2013 Jul;58(7):439-45. doi: 10.1038/jhg.2013.66. Epub 2013 Jun 6. Review.

PMID:
23739122
[PubMed - indexed for MEDLINE]
3.

H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome.

Pauler FM, Sloane MA, Huang R, Regha K, Koerner MV, Tamir I, Sommer A, Aszodi A, Jenuwein T, Barlow DP.

Genome Res. 2009 Feb;19(2):221-33. doi: 10.1101/gr.080861.108. Epub 2008 Dec 1.

PMID:
19047520
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Chromatin environment of histone variant H3.3 revealed by quantitative imaging and genome-scale chromatin and DNA immunoprecipitation.

Delbarre E, Jacobsen BM, Reiner AH, Sørensen AL, Küntziger T, Collas P.

Mol Biol Cell. 2010 Jun 1;21(11):1872-84. doi: 10.1091/mbc.E09-09-0839. Epub 2010 Apr 7. Erratum in: Mol Biol Cell. 2010 Nov;21(21):3759.

PMID:
20375147
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk.

Brinkman AB, Gu H, Bartels SJ, Zhang Y, Matarese F, Simmer F, Marks H, Bock C, Gnirke A, Meissner A, Stunnenberg HG.

Genome Res. 2012 Jun;22(6):1128-38. doi: 10.1101/gr.133728.111. Epub 2012 Mar 30.

PMID:
22466170
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Stability of histone modifications across mammalian genomes: implications for 'epigenetic' marking.

Lee BM, Mahadevan LC.

J Cell Biochem. 2009 Sep 1;108(1):22-34. doi: 10.1002/jcb.22250.

PMID:
19623574
[PubMed - indexed for MEDLINE]
7.

Variation in Xi chromatin organization and correlation of the H3K27me3 chromatin territories to transcribed sequences by microarray analysis.

Chadwick BP.

Chromosoma. 2007 Apr;116(2):147-57. Epub 2006 Nov 14.

PMID:
17103221
[PubMed - indexed for MEDLINE]
8.

Diverse histone modifications on histone 3 lysine 9 and their relation to DNA methylation in specifying gene silencing.

Wu J, Wang SH, Potter D, Liu JC, Smith LT, Wu YZ, Huang TH, Plass C.

BMC Genomics. 2007 May 24;8:131.

PMID:
17524140
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data.

Ashoor H, Hérault A, Kamoun A, Radvanyi F, Bajic VB, Barillot E, Boeva V.

Bioinformatics. 2013 Dec 1;29(23):2979-86. doi: 10.1093/bioinformatics/btt524. Epub 2013 Sep 9.

PMID:
24021381
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genome-wide analysis identifies changes in histone retention and epigenetic modifications at developmental and imprinted gene loci in the sperm of infertile men.

Hammoud SS, Nix DA, Hammoud AO, Gibson M, Cairns BR, Carrell DT.

Hum Reprod. 2011 Sep;26(9):2558-69. doi: 10.1093/humrep/der192. Epub 2011 Jun 17.

PMID:
21685136
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genome-wide analysis of histone H3 lysine 27 trimethylation by ChIP-chip in gastric cancer patients.

Zhang L, Zhong K, Dai Y, Zhou H.

J Gastroenterol. 2009;44(4):305-12. doi: 10.1007/s00535-009-0027-9. Epub 2009 Mar 10.

PMID:
19267258
[PubMed - indexed for MEDLINE]
12.

Genome-wide epigenetic analysis of human pluripotent stem cells by ChIP and ChIP-Seq.

Hitchler MJ, Rice JC.

Methods Mol Biol. 2011;767:253-67. doi: 10.1007/978-1-61779-201-4_19.

PMID:
21822881
[PubMed - indexed for MEDLINE]
13.

Genome-wide nucleosome mapping of Plasmodium falciparum reveals histone-rich coding and histone-poor intergenic regions and chromatin remodeling of core and subtelomeric genes.

Westenberger SJ, Cui L, Dharia N, Winzeler E, Cui L.

BMC Genomics. 2009 Dec 16;10:610. doi: 10.1186/1471-2164-10-610.

PMID:
20015349
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

CpG islands under selective pressure are enriched with H3K4me3, H3K27ac and H3K36me3 histone modifications.

Akhtar MM, Scala G, Cocozza S, Miele G, Monticelli A.

BMC Evol Biol. 2013 Jul 10;13:145. doi: 10.1186/1471-2148-13-145.

PMID:
23837650
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns.

Kratz A, Arner E, Saito R, Kubosaki A, Kawai J, Suzuki H, Carninci P, Arakawa T, Tomita M, Hayashizaki Y, Daub CO.

BMC Genomics. 2010 Apr 21;11:257. doi: 10.1186/1471-2164-11-257.

PMID:
20409305
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Germ line-limited and somatic chromosomes of Acricotopus lucidus differ in distribution and timing of alterations of histone modifications in male gonial mitosis and meiosis.

Staiber W.

Chromosome Res. 2012 Aug;20(6):717-34. doi: 10.1007/s10577-012-9308-x. Epub 2012 Aug 22.

PMID:
22911004
[PubMed - indexed for MEDLINE]
17.

Heterogeneity in the modification and involvement of chromatin components of the CpG island of the silenced human CDH1 gene in cancer cells.

Koizume S, Tachibana K, Sekiya T, Hirohashi S, Shiraishi M.

Nucleic Acids Res. 2002 Nov 1;30(21):4770-80.

PMID:
12409468
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

MMDiff: quantitative testing for shape changes in ChIP-Seq data sets.

Schweikert G, Cseke B, Clouaire T, Bird A, Sanguinetti G.

BMC Genomics. 2013 Nov 24;14:826. doi: 10.1186/1471-2164-14-826.

PMID:
24267901
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Chop it, ChIP it, check it: the current status of chromatin immunoprecipitation.

Collas P, Dahl JA.

Front Biosci. 2008 Jan 1;13:929-43. Review.

PMID:
17981601
[PubMed - indexed for MEDLINE]
20.

Clustered ChIP-Seq-defined transcription factor binding sites and histone modifications map distinct classes of regulatory elements.

Rye M, Sætrom P, Håndstad T, Drabløs F.

BMC Biol. 2011 Nov 24;9:80. doi: 10.1186/1741-7007-9-80.

PMID:
22115494
[PubMed - indexed for MEDLINE]
Free PMC Article

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