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Results: 1 to 20 of 112

1.

Rapid haplotype inference for nuclear families.

Williams AL, Housman DE, Rinard MC, Gifford DK.

Genome Biol. 2010;11(10):R108. doi: 10.1186/gb-2010-11-10-r108. Epub 2010 Oct 29.

PMID:
21034477
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Computing the minimum recombinant haplotype configuration from incomplete genotype data on a pedigree by integer linear programming.

Li J, Jiang T.

J Comput Biol. 2005 Jul-Aug;12(6):719-39.

PMID:
16108713
[PubMed - indexed for MEDLINE]
3.

Efficient inference of haplotypes from genotypes on a pedigree.

Li J, Jiang T.

J Bioinform Comput Biol. 2003 Apr;1(1):41-69.

PMID:
15290781
[PubMed - indexed for MEDLINE]
4.

A novel algorithm for minimum recombinant haplotyping on pedigrees by zero recombinant block partition.

Jiang HT, Xu Y, Zhao YZ, Chen GL.

Interdiscip Sci. 2010 Jun;2(2):185-92. doi: 10.1007/s12539-010-0089-7. Epub 2010 May 1.

PMID:
20640789
[PubMed - indexed for MEDLINE]
5.

Linked region detection using high-density SNP genotype data via the minimum recombinant model of pedigree haplotype inference.

Wang L, Wang Z, Yang W.

BMC Bioinformatics. 2009 Jul 15;10:216. doi: 10.1186/1471-2105-10-216.

PMID:
19604391
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Error detection in SNP data by considering the likelihood of recombinational history implied by three-site combinations.

Toleno DM, Morrell PL, Clegg MT.

Bioinformatics. 2007 Jul 15;23(14):1807-14. Epub 2007 May 17.

PMID:
17510172
[PubMed - indexed for MEDLINE]
Free Article
7.

Maximum-likelihood estimation of haplotype frequencies in nuclear families.

Becker T, Knapp M.

Genet Epidemiol. 2004 Jul;27(1):21-32.

PMID:
15185400
[PubMed - indexed for MEDLINE]
8.

[Evaluation of computational methods for HLA three loci haplotype by compare with family-based data].

Tang MZ, Li J, Cai YL, Zheng YM, Liao J, Zeng H, O'Brien S, Zeng Y.

Zhonghua Shi Yan He Lin Chuang Bing Du Xue Za Zhi. 2012 Aug;26(4):288-90. Chinese.

PMID:
23189847
[PubMed - indexed for MEDLINE]
9.

Shape-IT: new rapid and accurate algorithm for haplotype inference.

Delaneau O, Coulonges C, Zagury JF.

BMC Bioinformatics. 2008 Dec 16;9:540. doi: 10.1186/1471-2105-9-540.

PMID:
19087329
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Improved haplotype assembly using Xor genotypes.

Mousavi SR.

J Theor Biol. 2012 Apr 7;298:122-30. doi: 10.1016/j.jtbi.2012.01.003. Epub 2012 Jan 12.

PMID:
22251889
[PubMed - indexed for MEDLINE]
11.

Merlin--rapid analysis of dense genetic maps using sparse gene flow trees.

Abecasis GR, Cherny SS, Cookson WO, Cardon LR.

Nat Genet. 2002 Jan;30(1):97-101. Epub 2001 Dec 3.

PMID:
11731797
[PubMed - indexed for MEDLINE]
12.

Estimating haplotype frequencies and standard errors for multiple single nucleotide polymorphisms.

Li SS, Khalid N, Carlson C, Zhao LP.

Biostatistics. 2003 Oct;4(4):513-22.

PMID:
14557108
[PubMed - indexed for MEDLINE]
Free Article
13.

An approximation algorithm for haplotype inference by maximum parsimony.

Huang YT, Chao KM, Chen T.

J Comput Biol. 2005 Dec;12(10):1261-74.

PMID:
16379533
[PubMed - indexed for MEDLINE]
14.

htSNPer1.0: software for haplotype block partition and htSNPs selection.

Ding K, Zhang J, Zhou K, Shen Y, Zhang X.

BMC Bioinformatics. 2005 Mar 1;6:38.

PMID:
15740612
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A note on phasing long genomic regions using local haplotype predictions.

Eskin E, Sharan R, Halperin E.

J Bioinform Comput Biol. 2006 Jun;4(3):639-47.

PMID:
16960967
[PubMed - indexed for MEDLINE]
16.

Penalized estimation of haplotype frequencies.

Ayers KL, Lange K.

Bioinformatics. 2008 Jul 15;24(14):1596-602. doi: 10.1093/bioinformatics/btn236. Epub 2008 May 16.

PMID:
18487240
[PubMed - indexed for MEDLINE]
Free Article
17.

A linear-time algorithm for reconstructing zero-recombinant haplotype configuration on a pedigree.

Lai EY, Wang WB, Jiang T, Wu KP.

BMC Bioinformatics. 2012;13 Suppl 17:S19. doi: 10.1186/1471-2105-13-S17-S19. Epub 2012 Dec 13.

PMID:
23281626
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A preprocessing procedure for haplotype inference by pure parsimony.

Irurozki E, Calvo B, Lozano JA.

IEEE/ACM Trans Comput Biol Bioinform. 2011 Sep-Oct;8(5):1183-95. doi: 10.1109/TCBB.2010.125.

PMID:
21116044
[PubMed - indexed for MEDLINE]
19.

MOCSphaser: a haplotype inference tool from a mixture of copy number variation and single nucleotide polymorphism data.

Kato M, Nakamura Y, Tsunoda T.

Bioinformatics. 2008 Jul 15;24(14):1645-6. doi: 10.1093/bioinformatics/btn242. Epub 2008 May 20.

PMID:
18492685
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Hap-seq: an optimal algorithm for haplotype phasing with imputation using sequencing data.

He D, Han B, Eskin E.

J Comput Biol. 2013 Feb;20(2):80-92. doi: 10.1089/cmb.2012.0091.

PMID:
23383995
[PubMed - indexed for MEDLINE]
Free PMC Article

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