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Results: 1 to 20 of 104

1.

Heterochronic evolution reveals modular timing changes in budding yeast transcriptomes.

Simola DF, Francis C, Sniegowski PD, Kim J.

Genome Biol. 2010;11(10):R105. doi: 10.1186/gb-2010-11-10-r105. Epub 2010 Oct 22.

PMID:
20969771
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Selective inhibition of yeast regulons by daunorubicin: a transcriptome-wide analysis.

Rojas M, Casado M, Portugal J, Piña B.

BMC Genomics. 2008 Jul 30;9:358. doi: 10.1186/1471-2164-9-358.

PMID:
18667070
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach.

Bailly-Bechet M, Braunstein A, Pagnani A, Weigt M, Zecchina R.

BMC Bioinformatics. 2010 Jun 29;11:355. doi: 10.1186/1471-2105-11-355.

PMID:
20587029
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Computational discovery of transcriptional regulatory modules in fungal ribosome biogenesis genes reveals novel sequence and function patterns.

Martyanov V, Gross RH.

PLoS One. 2013;8(3):e59851. doi: 10.1371/journal.pone.0059851. Epub 2013 Mar 29.

PMID:
23555806
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Genetic dissection of transcriptional regulation in budding yeast.

Brem RB, Yvert G, Clinton R, Kruglyak L.

Science. 2002 Apr 26;296(5568):752-5. Epub 2002 Mar 28.

PMID:
11923494
[PubMed - indexed for MEDLINE]
Free Article
6.

Global mRNA expression analysis in myosin II deficient strains of Saccharomyces cerevisiae reveals an impairment of cell integrity functions.

Rodríguez-Quiñones JF, Irizarry RA, Díaz-Blanco NL, Rivera-Molina FE, Gómez-Garzón D, Rodríguez-Medina JR.

BMC Genomics. 2008 Jan 23;9:34. doi: 10.1186/1471-2164-9-34.

PMID:
18215314
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Expression evolution in yeast genes of single-input modules is mainly due to changes in trans-acting factors.

Wang D, Sung HM, Wang TY, Huang CJ, Yang P, Chang T, Wang YC, Tseng DL, Wu JP, Lee TC, Shih MC, Li WH.

Genome Res. 2007 Aug;17(8):1161-9. Epub 2007 Jul 5.

PMID:
17615293
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A yeast hybrid provides insight into the evolution of gene expression regulation.

Tirosh I, Reikhav S, Levy AA, Barkai N.

Science. 2009 May 1;324(5927):659-62. doi: 10.1126/science.1169766.

PMID:
19407207
[PubMed - indexed for MEDLINE]
Free Article
10.

Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle.

Wu WS, Li WH, Chen BS.

BMC Bioinformatics. 2006 Sep 29;7:421.

PMID:
17010188
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Coordinated evolution of co-expressed gene clusters in the Drosophila transcriptome.

Mezey JG, Nuzhdin SV, Ye F, Jones CD.

BMC Evol Biol. 2008 Jan 7;8:2. doi: 10.1186/1471-2148-8-2.

PMID:
18179715
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycle.

Bushel PR, Heard NA, Gutman R, Liu L, Peddada SD, Pyne S.

BMC Syst Biol. 2009 Sep 16;3:93. doi: 10.1186/1752-0509-3-93.

PMID:
19758441
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genome-wide analysis of the cis-regulatory modules of divergent gene pairs in yeast.

Su CH, Shih CH, Chang TH, Tsai HK.

Genomics. 2010 Dec;96(6):352-61. doi: 10.1016/j.ygeno.2010.08.008. Epub 2010 Sep 6.

PMID:
20826206
[PubMed - indexed for MEDLINE]
Free Article
14.

Transcriptome profiling of a Saccharomyces cerevisiae mutant with a constitutively activated Ras/cAMP pathway.

Jones DL, Petty J, Hoyle DC, Hayes A, Ragni E, Popolo L, Oliver SG, Stateva LI.

Physiol Genomics. 2003 Dec 16;16(1):107-18.

PMID:
14570984
[PubMed - indexed for MEDLINE]
15.

Statistical methods in integrative analysis for gene regulatory modules.

Zeng L, Wu J, Xie J.

Stat Appl Genet Mol Biol. 2008;7(1):Article 28. doi: 10.2202/1544-6115.1369. Epub 2008 Oct 10.

PMID:
18976224
[PubMed - indexed for MEDLINE]
16.

Time course gene expression profiling of yeast spore germination reveals a network of transcription factors orchestrating the global response.

Geijer C, Pirkov I, Vongsangnak W, Ericsson A, Nielsen J, Krantz M, Hohmann S.

BMC Genomics. 2012 Oct 15;13:554. doi: 10.1186/1471-2164-13-554.

PMID:
23066959
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Evolutionary rates and centrality in the yeast gene regulatory network.

Jovelin R, Phillips PC.

Genome Biol. 2009;10(4):R35. doi: 10.1186/gb-2009-10-4-r35. Epub 2009 Apr 9.

PMID:
19358738
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Polygenic cis-regulatory adaptation in the evolution of yeast pathogenicity.

Fraser HB, Levy S, Chavan A, Shah HB, Perez JC, Zhou Y, Siegal ML, Sinha H.

Genome Res. 2012 Oct;22(10):1930-9. doi: 10.1101/gr.134080.111. Epub 2012 May 29.

PMID:
22645260
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Evolution and regulation of cellular periodic processes: a role for paralogues.

Trachana K, Jensen LJ, Bork P.

EMBO Rep. 2010 Mar;11(3):233-8. doi: 10.1038/embor.2010.9. Epub 2010 Feb 19.

PMID:
20168326
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Revealing static and dynamic modular architecture of the eukaryotic protein interaction network.

Komurov K, White M.

Mol Syst Biol. 2007;3:110. Epub 2007 Apr 24.

PMID:
17453049
[PubMed - indexed for MEDLINE]
Free PMC Article

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