Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 100

1.

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences.

Goecks J, Nekrutenko A, Taylor J; Galaxy Team.

Genome Biol. 2010;11(8):R86. doi: 10.1186/gb-2010-11-8-r86. Epub 2010 Aug 25.

PMID:
20738864
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The missing graphical user interface for genomics.

Schatz MC.

Genome Biol. 2010;11(8):128. doi: 10.1186/gb-2010-11-8-128. Epub 2010 Aug 25.

PMID:
20804568
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Integrating diverse databases into an unified analysis framework: a Galaxy approach.

Blankenberg D, Coraor N, Von Kuster G, Taylor J, Nekrutenko A; Galaxy Team.

Database (Oxford). 2011 Apr 29;2011:bar011. doi: 10.1093/database/bar011. Print 2011.

PMID:
21531983
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Galaxy: a web-based genome analysis tool for experimentalists.

Blankenberg D, Von Kuster G, Coraor N, Ananda G, Lazarus R, Mangan M, Nekrutenko A, Taylor J.

Curr Protoc Mol Biol. 2010 Jan;Chapter 19:Unit 19.10.1-21. doi: 10.1002/0471142727.mb1910s89.

PMID:
20069535
[PubMed - indexed for MEDLINE]
5.

Making whole genome multiple alignments usable for biologists.

Blankenberg D, Taylor J, Nekrutenko A; Galaxy Team.

Bioinformatics. 2011 Sep 1;27(17):2426-8. doi: 10.1093/bioinformatics/btr398. Epub 2011 Jul 19.

PMID:
21775304
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Editorial: protein systems biology: method, regulation, and network.

Chen Q, Chen M.

Curr Protein Pept Sci. 2014;15(6):519-21.

PMID:
25135673
[PubMed - in process]
7.

Web-based visual analysis for high-throughput genomics.

Goecks J, Eberhard C, Too T; Galaxy Team, Nekrutenko A, Taylor J.

BMC Genomics. 2013 Jun 13;14:397. doi: 10.1186/1471-2164-14-397.

PMID:
23758618
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Manipulation of FASTQ data with Galaxy.

Blankenberg D, Gordon A, Von Kuster G, Coraor N, Taylor J, Nekrutenko A; Galaxy Team.

Bioinformatics. 2010 Jul 15;26(14):1783-5. doi: 10.1093/bioinformatics/btq281. Epub 2010 Jun 18.

PMID:
20562416
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Web-based analysis of (Epi-) genome data using EpiGRAPH and Galaxy.

Bock C, Von Kuster G, Halachev K, Taylor J, Nekrutenko A, Lengauer T.

Methods Mol Biol. 2010;628:275-96. doi: 10.1007/978-1-60327-367-1_15.

PMID:
20238087
[PubMed - indexed for MEDLINE]
10.

AVISPA: a web tool for the prediction and analysis of alternative splicing.

Barash Y, Vaquero-Garcia J, González-Vallinas J, Xiong HY, Gao W, Lee LJ, Frey BJ.

Genome Biol. 2013;14(10):R114.

PMID:
24156756
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Computational prediction of microRNA targets.

Wang X.

Methods Mol Biol. 2010;667:283-95. doi: 10.1007/978-1-60761-811-9_19.

PMID:
20827541
[PubMed - indexed for MEDLINE]
12.

Gitools: analysis and visualisation of genomic data using interactive heat-maps.

Perez-Llamas C, Lopez-Bigas N.

PLoS One. 2011;6(5):e19541. doi: 10.1371/journal.pone.0019541. Epub 2011 May 13.

PMID:
21602921
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis.

Merelli I, Viti F, Milanesi L.

BMC Bioinformatics. 2012;13 Suppl 14:S5. doi: 10.1186/1471-2105-13-S14-S5. Epub 2012 Sep 7.

PMID:
23095257
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Pathway projector: web-based zoomable pathway browser using KEGG atlas and Google Maps API.

Kono N, Arakawa K, Ogawa R, Kido N, Oshita K, Ikegami K, Tamaki S, Tomita M.

PLoS One. 2009 Nov 11;4(11):e7710. doi: 10.1371/journal.pone.0007710.

PMID:
19907644
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Ensembl's 10th year.

Flicek P, Aken BL, Ballester B, Beal K, Bragin E, Brent S, Chen Y, Clapham P, Coates G, Fairley S, Fitzgerald S, Fernandez-Banet J, Gordon L, Gräf S, Haider S, Hammond M, Howe K, Jenkinson A, Johnson N, Kähäri A, Keefe D, Keenan S, Kinsella R, Kokocinski F, Koscielny G, Kulesha E, Lawson D, Longden I, Massingham T, McLaren W, Megy K, Overduin B, Pritchard B, Rios D, Ruffier M, Schuster M, Slater G, Smedley D, Spudich G, Tang YA, Trevanion S, Vilella A, Vogel J, White S, Wilder SP, Zadissa A, Birney E, Cunningham F, Dunham I, Durbin R, Fernández-Suarez XM, Herrero J, Hubbard TJ, Parker A, Proctor G, Smith J, Searle SM.

Nucleic Acids Res. 2010 Jan;38(Database issue):D557-62. doi: 10.1093/nar/gkp972. Epub 2009 Nov 11.

PMID:
19906699
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

EpiGRAPH: user-friendly software for statistical analysis and prediction of (epi)genomic data.

Bock C, Halachev K, Büch J, Lengauer T.

Genome Biol. 2009 Feb 10;10(2):R14. doi: 10.1186/gb-2009-10-2-r14.

PMID:
19208250
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

SilkDB v2.0: a platform for silkworm (Bombyx mori ) genome biology.

Duan J, Li R, Cheng D, Fan W, Zha X, Cheng T, Wu Y, Wang J, Mita K, Xiang Z, Xia Q.

Nucleic Acids Res. 2010 Jan;38(Database issue):D453-6. doi: 10.1093/nar/gkp801. Epub 2009 Sep 30.

PMID:
19793867
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Cistrome: an integrative platform for transcriptional regulation studies.

Liu T, Ortiz JA, Taing L, Meyer CA, Lee B, Zhang Y, Shin H, Wong SS, Ma J, Lei Y, Pape UJ, Poidinger M, Chen Y, Yeung K, Brown M, Turpaz Y, Liu XS.

Genome Biol. 2011 Aug 22;12(8):R83. doi: 10.1186/gb-2011-12-8-r83.

PMID:
21859476
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

SMART 4.0: towards genomic data integration.

Letunic I, Copley RR, Schmidt S, Ciccarelli FD, Doerks T, Schultz J, Ponting CP, Bork P.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D142-4.

PMID:
14681379
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Conducting research on the web: 2007 update for the bioinformatics links directory.

Fox JA, McMillan S, Ouellette BF.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W3-5. Epub 2007 Jun 22.

PMID:
17586821
[PubMed - indexed for MEDLINE]
Free PMC Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk