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Results: 1 to 20 of 102

1.

Identification of novel exons and transcribed regions by chimpanzee transcriptome sequencing.

Wetterbom A, Ameur A, Feuk L, Gyllensten U, Cavelier L.

Genome Biol. 2010;11(7):R78. doi: 10.1186/gb-2010-11-7-r78. Epub 2010 Jul 23.

PMID:
20653958
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Intergenic and repeat transcription in human, chimpanzee and macaque brains measured by RNA-Seq.

Xu AG, He L, Li Z, Xu Y, Li M, Fu X, Yan Z, Yuan Y, Menzel C, Li N, Somel M, Hu H, Chen W, Pääbo S, Khaitovich P.

PLoS Comput Biol. 2010 Jul 1;6:e1000843. doi: 10.1371/journal.pcbi.1000843.

PMID:
20617162
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Annotating conserved and novel features of primate transcriptomes using sequencing.

Khaitovich P.

Genome Biol. 2010;11(7):125. doi: 10.1186/gb-2010-11-7-125. Epub 2010 Jul 23.

PMID:
20624272
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees.

Khaitovich P, Hellmann I, Enard W, Nowick K, Leinweber M, Franz H, Weiss G, Lachmann M, Pääbo S.

Science. 2005 Sep 16;309(5742):1850-4. Epub 2005 Sep 1.

PMID:
16141373
[PubMed - indexed for MEDLINE]
Free Article
5.

Functionality of intergenic transcription: an evolutionary comparison.

Khaitovich P, Kelso J, Franz H, Visagie J, Giger T, Joerchel S, Petzold E, Green RE, Lachmann M, Pääbo S.

PLoS Genet. 2006 Oct 13;2(10):e171. Epub 2006 Aug 28.

PMID:
17040132
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Screening the human exome: a comparison of whole genome and whole transcriptome sequencing.

Cirulli ET, Singh A, Shianna KV, Ge D, Smith JP, Maia JM, Heinzen EL, Goedert JJ, Goldstein DB; Center for HIV/AIDS Vaccine Immunology (CHAVI).

Genome Biol. 2010;11(5):R57. doi: 10.1186/gb-2010-11-5-r57. Epub 2010 May 28.

PMID:
20598109
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome.

Sultan M, Schulz MH, Richard H, Magen A, Klingenhoff A, Scherf M, Seifert M, Borodina T, Soldatov A, Parkhomchuk D, Schmidt D, O'Keeffe S, Haas S, Vingron M, Lehrach H, Yaspo ML.

Science. 2008 Aug 15;321(5891):956-60. doi: 10.1126/science.1160342. Epub 2008 Jul 3.

PMID:
18599741
[PubMed - indexed for MEDLINE]
Free Article
8.

Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach.

Bainbridge MN, Warren RL, Hirst M, Romanuik T, Zeng T, Go A, Delaney A, Griffith M, Hickenbotham M, Magrini V, Mardis ER, Sadar MD, Siddiqui AS, Marra MA, Jones SJ.

BMC Genomics. 2006 Sep 29;7:246.

PMID:
17010196
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Global discovery of primate-specific genes in the human genome.

Tay SK, Blythe J, Lipovich L.

Proc Natl Acad Sci U S A. 2009 Jul 21;106(29):12019-24. doi: 10.1073/pnas.0904569106. Epub 2009 Jul 6. Erratum in: Proc Natl Acad Sci U S A. 2009 Aug 18;106(33):14180.

PMID:
19581580
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Mapping of chimpanzee full-length cDNAs onto the human genome unveils large potential divergence of the transcriptome.

Sakate R, Suto Y, Imanishi T, Tanoue T, Hida M, Hayasaka I, Kusuda J, Gojobori T, Hashimoto K, Hirai M.

Gene. 2007 Sep 1;399(1):1-10. Epub 2007 Apr 20.

PMID:
17574350
[PubMed - indexed for MEDLINE]
11.

Comparative genomics: grasping human transcriptome evolution: what does it all mean?

Oldham MC, Geschwind DH.

Heredity (Edinb). 2006 May;96(5):339-40. No abstract available.

PMID:
16552432
[PubMed - indexed for MEDLINE]
Free Article
12.

Identification and analysis of ancestral hominoid transcriptome inferred from cross-species transcript and processed pseudogene comparisons.

Huang YT, Chen FC, Chen CJ, Chen HL, Chuang TJ.

Genome Res. 2008 Jul;18(7):1163-70. doi: 10.1101/gr.075556.107. Epub 2008 Mar 27.

PMID:
18369177
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Global identification of human transcribed sequences with genome tiling arrays.

Bertone P, Stolc V, Royce TE, Rozowsky JS, Urban AE, Zhu X, Rinn JL, Tongprasit W, Samanta M, Weissman S, Gerstein M, Snyder M.

Science. 2004 Dec 24;306(5705):2242-6. Epub 2004 Nov 11.

PMID:
15539566
[PubMed - indexed for MEDLINE]
Free Article
14.

Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags.

Shin H, Hirst M, Bainbridge MN, Magrini V, Mardis E, Moerman DG, Marra MA, Baillie DL, Jones SJ.

BMC Biol. 2008 Jul 8;6:30. doi: 10.1186/1741-7007-6-30.

PMID:
18611272
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Genome-wide analysis of factors regulating gene expression in liver.

Teufel A, Weinmann A, Krupp M, Budinger M, Galle PR.

Gene. 2007 Mar 15;389(2):114-21. Epub 2006 Nov 7.

PMID:
17174484
[PubMed - indexed for MEDLINE]
16.

Selection on human genes as revealed by comparisons to chimpanzee cDNA.

Hellmann I, Zollner S, Enard W, Ebersberger I, Nickel B, Paabo S.

Genome Res. 2003 May;13(5):831-7.

PMID:
12727903
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Most "dark matter" transcripts are associated with known genes.

van Bakel H, Nislow C, Blencowe BJ, Hughes TR.

PLoS Biol. 2010 May 18;8(5):e1000371. doi: 10.1371/journal.pbio.1000371.

PMID:
20502517
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

[Chimpanzee genome sequencing and comparative analysis with the human genome].

Watanabe H, Hattori M.

Tanpakushitsu Kakusan Koso. 2006 Feb;51(2):178-87. Review. Japanese. No abstract available.

PMID:
16457209
[PubMed - indexed for MEDLINE]
19.

Report on the tenth international workshop on the identification of transcribed sequences 2000. Heidelberg, Germany, October 28-31, 2000.

Korn B, Weissman S, Werner T, Gardiner K.

Cytogenet Cell Genet. 2001;92(1-2):49-58. No abstract available.

PMID:
11306796
[PubMed - indexed for MEDLINE]
20.

High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans.

Ramani AK, Nelson AC, Kapranov P, Bell I, Gingeras TR, Fraser AG.

Genome Biol. 2009;10(9):R101. doi: 10.1186/gb-2009-10-9-r101. Epub 2009 Sep 24.

PMID:
19778439
[PubMed - indexed for MEDLINE]
Free PMC Article

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