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Results: 1 to 20 of 401

1.

Experimental annotation of the human pathogen Candida albicans coding and noncoding transcribed regions using high-resolution tiling arrays.

Sellam A, Hogues H, Askew C, Tebbji F, van Het Hoog M, Lavoie H, Kumamoto CA, Whiteway M, Nantel A.

Genome Biol. 2010;11(7):R71. doi: 10.1186/gb-2010-11-7-r71. Epub 2010 Jul 9.

PMID:
20618945
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Genome-wide transcriptome analysis in yeast using high-density tiling arrays.

David L, Clauder-Münster S, Steinmetz LM.

Methods Mol Biol. 2011;759:107-23. doi: 10.1007/978-1-61779-173-4_7.

PMID:
21863484
[PubMed - indexed for MEDLINE]
3.

XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast.

van Dijk EL, Chen CL, d'Aubenton-Carafa Y, Gourvennec S, Kwapisz M, Roche V, Bertrand C, Silvain M, Legoix-Né P, Loeillet S, Nicolas A, Thermes C, Morillon A.

Nature. 2011 Jun 22;475(7354):114-7. doi: 10.1038/nature10118.

PMID:
21697827
[PubMed - indexed for MEDLINE]
4.

A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription.

Babak T, Blencowe BJ, Hughes TR.

BMC Genomics. 2005 Aug 5;6:104.

PMID:
16083503
[PubMed - indexed for MEDLINE]
Free PMC Article
5.
6.

Genome-wide analysis of mRNA lengths in Saccharomyces cerevisiae.

Hurowitz EH, Brown PO.

Genome Biol. 2003;5(1):R2. Epub 2003 Dec 22.

PMID:
14709174
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A high-resolution map of transcription in the yeast genome.

David L, Huber W, Granovskaia M, Toedling J, Palm CJ, Bofkin L, Jones T, Davis RW, Steinmetz LM.

Proc Natl Acad Sci U S A. 2006 Apr 4;103(14):5320-5. Epub 2006 Mar 28.

PMID:
16569694
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Comparative analysis of structured RNAs in S. cerevisiae indicates a multitude of different functions.

Steigele S, Huber W, Stocsits C, Stadler PF, Nieselt K.

BMC Biol. 2007 Jun 18;5:25.

PMID:
17577407
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution.

Wilhelm BT, Marguerat S, Watt S, Schubert F, Wood V, Goodhead I, Penkett CJ, Rogers J, Bähler J.

Nature. 2008 Jun 26;453(7199):1239-43. doi: 10.1038/nature07002. Epub 2008 May 18.

PMID:
18488015
[PubMed - indexed for MEDLINE]
10.

Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays.

Tjaden B, Saxena RM, Stolyar S, Haynor DR, Kolker E, Rosenow C.

Nucleic Acids Res. 2002 Sep 1;30(17):3732-8.

PMID:
12202758
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array.

Vercruysse M, Fauvart M, Cloots L, Engelen K, Thijs IM, Marchal K, Michiels J.

BMC Genomics. 2010 Jan 20;11:53. doi: 10.1186/1471-2164-11-53.

PMID:
20089193
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Identification of novel non-coding small RNAs from Streptococcus pneumoniae TIGR4 using high-resolution genome tiling arrays.

Kumar R, Shah P, Swiatlo E, Burgess SC, Lawrence ML, Nanduri B.

BMC Genomics. 2010 Jun 3;11:350. doi: 10.1186/1471-2164-11-350.

PMID:
20525227
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data.

Lu ZJ, Yip KY, Wang G, Shou C, Hillier LW, Khurana E, Agarwal A, Auerbach R, Rozowsky J, Cheng C, Kato M, Miller DM, Slack F, Snyder M, Waterston RH, Reinke V, Gerstein MB.

Genome Res. 2011 Feb;21(2):276-85. doi: 10.1101/gr.110189.110. Epub 2010 Dec 22. Erratum in: Genome Res. 2011 May;21(5):811.

PMID:
21177971
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Phenotypic screening, transcriptional profiling, and comparative genomic analysis of an invasive and non-invasive strain of Candida albicans.

Thewes S, Moran GP, Magee BB, Schaller M, Sullivan DJ, Hube B.

BMC Microbiol. 2008 Oct 24;8:187. doi: 10.1186/1471-2180-8-187.

PMID:
18950481
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

High-resolution transcription atlas of the mitotic cell cycle in budding yeast.

Granovskaia MV, Jensen LJ, Ritchie ME, Toedling J, Ning Y, Bork P, Huber W, Steinmetz LM.

Genome Biol. 2010;11(3):R24. doi: 10.1186/gb-2010-11-3-r24. Epub 2010 Mar 1.

PMID:
20193063
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Experimental annotation of the human pathogen Histoplasma capsulatum transcribed regions using high-resolution tiling arrays.

Voorhies M, Foo CK, Sil A.

BMC Microbiol. 2011 Sep 29;11:216. doi: 10.1186/1471-2180-11-216.

PMID:
21958208
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Complete DNA sequence of the linear mitochondrial genome of the pathogenic yeast Candida parapsilosis.

Nosek J, Novotna M, Hlavatovicova Z, Ussery DW, Fajkus J, Tomaska L.

Mol Genet Genomics. 2004 Sep;272(2):173-80. Epub 2004 Jul 29.

PMID:
15449175
[PubMed - indexed for MEDLINE]
18.

Computational and experimental approaches double the number of known introns in the pathogenic yeast Candida albicans.

Mitrovich QM, Tuch BB, Guthrie C, Johnson AD.

Genome Res. 2007 Apr;17(4):492-502. Epub 2007 Mar 9.

PMID:
17351132
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

An antisense-based functional genomics approach for identification of genes critical for growth of Candida albicans.

De Backer MD, Nelissen B, Logghe M, Viaene J, Loonen I, Vandoninck S, de Hoogt R, Dewaele S, Simons FA, Verhasselt P, Vanhoof G, Contreras R, Luyten WH.

Nat Biotechnol. 2001 Mar;19(3):235-41. Erratum in: Nat Biotechnol 2001 Jul;19(7):681.

PMID:
11231556
[PubMed - indexed for MEDLINE]
20.

Chromatin remodeling around nucleosome-free regions leads to repression of noncoding RNA transcription.

Yadon AN, Van de Mark D, Basom R, Delrow J, Whitehouse I, Tsukiyama T.

Mol Cell Biol. 2010 Nov;30(21):5110-22. doi: 10.1128/MCB.00602-10. Epub 2010 Aug 30.

PMID:
20805356
[PubMed - indexed for MEDLINE]
Free PMC Article

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