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Results: 1 to 20 of 149

1.

Design and evaluation of genome-wide libraries for RNA interference screens.

Horn T, Sandmann T, Boutros M.

Genome Biol. 2010;11(6):R61. doi: 10.1186/gb-2010-11-6-r61. Epub 2010 Jun 15.

PMID:
20550664
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

E-RNAi: a web application to design optimized RNAi constructs.

Arziman Z, Horn T, Boutros M.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W582-8.

PMID:
15980541
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

GenomeRNAi: a database for cell-based RNAi phenotypes. 2009 update.

Gilsdorf M, Horn T, Arziman Z, Pelz O, Kiner E, Boutros M.

Nucleic Acids Res. 2010 Jan;38(Database issue):D448-52. doi: 10.1093/nar/gkp1038. Epub 2009 Nov 12.

PMID:
19910367
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

E-RNAi: a web application for the multi-species design of RNAi reagents--2010 update.

Horn T, Boutros M.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W332-9. doi: 10.1093/nar/gkq317. Epub 2010 May 5.

PMID:
20444868
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila.

Dietzl G, Chen D, Schnorrer F, Su KC, Barinova Y, Fellner M, Gasser B, Kinsey K, Oppel S, Scheiblauer S, Couto A, Marra V, Keleman K, Dickson BJ.

Nature. 2007 Jul 12;448(7150):151-6.

PMID:
17625558
[PubMed - indexed for MEDLINE]
6.

Genome-wide RNAi as a route to gene function in Drosophila.

Kuttenkeuler D, Boutros M.

Brief Funct Genomic Proteomic. 2004 Aug;3(2):168-76. Review.

PMID:
15355598
[PubMed - indexed for MEDLINE]
Free Article
7.

Cellular phenotyping by RNAi.

Fuchs F, Boutros M.

Brief Funct Genomic Proteomic. 2006 Mar;5(1):52-6. Epub 2006 Feb 23. Review.

PMID:
16769679
[PubMed - indexed for MEDLINE]
Free Article
8.

RNA string kernels for RNAi off-target evaluation.

Qiu S, Lane T.

Int J Bioinform Res Appl. 2006;2(2):132-46.

PMID:
18048158
[PubMed - indexed for MEDLINE]
9.

Genome-wide screening for gene function using RNAi in mammalian cells.

Cullen LM, Arndt GM.

Immunol Cell Biol. 2005 Jun;83(3):217-23. Review.

PMID:
15877598
[PubMed - indexed for MEDLINE]
10.

Analysis of protein phosphatase function in Drosophila cells using RNA interference.

Silverstein AM, Mumby MC.

Methods Enzymol. 2003;366:361-72.

PMID:
14674261
[PubMed - indexed for MEDLINE]
11.

Technique review: how to use RNA interference.

Lehner B, Fraser AG, Sanderson CM.

Brief Funct Genomic Proteomic. 2004 Apr;3(1):68-83. Review.

PMID:
15163361
[PubMed - indexed for MEDLINE]
Free Article
12.

From sequence to function: using RNAi to elucidate mechanisms of human disease.

Wolters NM, MacKeigan JP.

Cell Death Differ. 2008 May;15(5):809-19. doi: 10.1038/sj.cdd.4402311. Epub 2008 Jan 18. Review.

PMID:
18202701
[PubMed - indexed for MEDLINE]
Free Article
13.

Advances in genome-wide RNAi cellular screens: a case study using the Drosophila JAK/STAT pathway.

Fisher KH, Wright VM, Taylor A, Zeidler MP, Brown S.

BMC Genomics. 2012 Sep 24;13:506. doi: 10.1186/1471-2164-13-506.

PMID:
23006893
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

FLIGHT: database and tools for the integration and cross-correlation of large-scale RNAi phenotypic datasets.

Sims D, Bursteinas B, Gao Q, Zvelebil M, Baum B.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D479-83.

PMID:
16381916
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

High-throughput RNA interference screening using pooled shRNA libraries and next generation sequencing.

Sims D, Mendes-Pereira AM, Frankum J, Burgess D, Cerone MA, Lombardelli C, Mitsopoulos C, Hakas J, Murugaesu N, Isacke CM, Fenwick K, Assiotis I, Kozarewa I, Zvelebil M, Ashworth A, Lord CJ.

Genome Biol. 2011 Oct 21;12(10):R104. doi: 10.1186/gb-2011-12-10-r104.

PMID:
22018332
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Systematic genetic analysis of muscle morphogenesis and function in Drosophila.

Schnorrer F, Schönbauer C, Langer CC, Dietzl G, Novatchkova M, Schernhuber K, Fellner M, Azaryan A, Radolf M, Stark A, Keleman K, Dickson BJ.

Nature. 2010 Mar 11;464(7286):287-91. doi: 10.1038/nature08799.

PMID:
20220848
[PubMed - indexed for MEDLINE]
17.

Genome-wide sreening by using small-interfering RNA expression libraries.

Matsumoto S, Miyagishi M, Taira K.

Methods Mol Biol. 2007;360:131-42.

PMID:
17172728
[PubMed - indexed for MEDLINE]
18.

The use of SSMD-based false discovery and false nondiscovery rates in genome-scale RNAi screens.

Zhang XD, Lacson R, Yang R, Marine SD, McCampbell A, Toolan DM, Hare TR, Kajdas J, Berger JP, Holder DJ, Heyse JF, Ferrer M.

J Biomol Screen. 2010 Oct;15(9):1123-31. doi: 10.1177/1087057110381919. Epub 2010 Sep 17.

PMID:
20852024
[PubMed - indexed for MEDLINE]
19.

siRNAs and shRNAs: skeleton keys to the human genome.

Paddison PJ, Hannon GJ.

Curr Opin Mol Ther. 2003 Jun;5(3):217-24. Review.

PMID:
12870430
[PubMed - indexed for MEDLINE]
20.

RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screens.

Rieber N, Knapp B, Eils R, Kaderali L.

Bioinformatics. 2009 Mar 1;25(5):678-9. doi: 10.1093/bioinformatics/btp014. Epub 2009 Jan 25.

PMID:
19168909
[PubMed - indexed for MEDLINE]
Free Article

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