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Results: 1 to 20 of 82

1.

Flux balance analysis accounting for metabolite dilution.

Benyamini T, Folger O, Ruppin E, Shlomi T.

Genome Biol. 2010;11(4):R43. doi: 10.1186/gb-2010-11-4-r43. Epub 2010 Apr 16.

PMID:
20398381
[PubMed - indexed for MEDLINE]
Free PMC Article
2.
3.

Steady-state and dynamic flux balance analysis of ethanol production by Saccharomyces cerevisiae.

Hjersted JL, Henson MA.

IET Syst Biol. 2009 May;3(3):167-79. doi: 10.1049/iet-syb.2008.0103.

PMID:
19449977
[PubMed - indexed for MEDLINE]
4.

Flux balance analysis: interrogating genome-scale metabolic networks.

Oberhardt MA, Chavali AK, Papin JA.

Methods Mol Biol. 2009;500:61-80. doi: 10.1007/978-1-59745-525-1_3.

PMID:
19399432
[PubMed - indexed for MEDLINE]
5.

Flux imbalance analysis and the sensitivity of cellular growth to changes in metabolite pools.

Reznik E, Mehta P, Segrè D.

PLoS Comput Biol. 2013;9(8):e1003195. doi: 10.1371/journal.pcbi.1003195. Epub 2013 Aug 29.

PMID:
24009492
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Predicting biological system objectives de novo from internal state measurements.

Gianchandani EP, Oberhardt MA, Burgard AP, Maranas CD, Papin JA.

BMC Bioinformatics. 2008 Jan 24;9:43. doi: 10.1186/1471-2105-9-43.

PMID:
18218092
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Understanding the adaptive growth strategy of Lactobacillus plantarum by in silico optimisation.

Teusink B, Wiersma A, Jacobs L, Notebaart RA, Smid EJ.

PLoS Comput Biol. 2009 Jun;5(6):e1000410. doi: 10.1371/journal.pcbi.1000410. Epub 2009 Jun 12.

PMID:
19521528
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A metabolite-centric view on flux distributions in genome-scale metabolic models.

Riemer SA, Rex R, Schomburg D.

BMC Syst Biol. 2013 Apr 12;7:33. doi: 10.1186/1752-0509-7-33.

PMID:
23587327
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Regularizing capacity of metabolic networks.

Marr C, Müller-Linow M, Hütt MT.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Apr;75(4 Pt 1):041917. Epub 2007 Apr 26.

PMID:
17500931
[PubMed - indexed for MEDLINE]
10.

Multiobjective flux balancing using the NISE method for metabolic network analysis.

Oh YG, Lee DY, Lee SY, Park S.

Biotechnol Prog. 2009 Jul-Aug;25(4):999-1008. doi: 10.1002/btpr.193.

PMID:
19572405
[PubMed - indexed for MEDLINE]
11.

Manipulating the steady state of metabolic pathways.

Song B, Büyüktahtakin IE, Ranka S, Kahveci T.

IEEE/ACM Trans Comput Biol Bioinform. 2011 May-Jun;8(3):732-47. doi: 10.1109/TCBB.2010.41.

PMID:
20479507
[PubMed - indexed for MEDLINE]
12.
13.

Is maximization of molar yield in metabolic networks favoured by evolution?

Schuster S, Pfeiffer T, Fell DA.

J Theor Biol. 2008 Jun 7;252(3):497-504. doi: 10.1016/j.jtbi.2007.12.008. Epub 2007 Dec 23.

PMID:
18249414
[PubMed - indexed for MEDLINE]
14.

Large-scale computation of elementary flux modes with bit pattern trees.

Terzer M, Stelling J.

Bioinformatics. 2008 Oct 1;24(19):2229-35. doi: 10.1093/bioinformatics/btn401. Epub 2008 Aug 1.

PMID:
18676417
[PubMed - indexed for MEDLINE]
Free Article
15.

Identifying and characterising regulatory metabolites with generalised supply-demand analysis.

Rohwer JM, Hofmeyr JH.

J Theor Biol. 2008 Jun 7;252(3):546-54. Epub 2007 Nov 1.

PMID:
18068730
[PubMed - indexed for MEDLINE]
16.

Flux balance analysis: a geometric perspective.

Smallbone K, Simeonidis E.

J Theor Biol. 2009 May 21;258(2):311-5. doi: 10.1016/j.jtbi.2009.01.027. Epub 2009 Feb 7.

PMID:
19490860
[PubMed - indexed for MEDLINE]
17.

What is flux balance analysis?

Orth JD, Thiele I, Palsson BØ.

Nat Biotechnol. 2010 Mar;28(3):245-8. doi: 10.1038/nbt.1614. No abstract available.

PMID:
20212490
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Metabolic flux analysis and visualization.

Toya Y, Kono N, Arakawa K, Tomita M.

J Proteome Res. 2011 Aug 5;10(8):3313-23. doi: 10.1021/pr2002885.

PMID:
21815690
[PubMed - indexed for MEDLINE]
19.

Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems.

Schilling CH, Edwards JS, Letscher D, Palsson BØ.

Biotechnol Bioeng. 2000-2001;71(4):286-306.

PMID:
11291038
[PubMed - indexed for MEDLINE]
20.

Integration of enzyme activities into metabolic flux distributions by elementary mode analysis.

Kurata H, Zhao Q, Okuda R, Shimizu K.

BMC Syst Biol. 2007 Jul 18;1:31.

PMID:
17640350
[PubMed - indexed for MEDLINE]
Free PMC Article

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