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Results: 1 to 20 of 137

1.

High-resolution transcription atlas of the mitotic cell cycle in budding yeast.

Granovskaia MV, Jensen LJ, Ritchie ME, Toedling J, Ning Y, Bork P, Huber W, Steinmetz LM.

Genome Biol. 2010;11(3):R24. doi: 10.1186/gb-2010-11-3-r24. Epub 2010 Mar 1.

PMID:
20193063
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast.

van Dijk EL, Chen CL, d'Aubenton-Carafa Y, Gourvennec S, Kwapisz M, Roche V, Bertrand C, Silvain M, Legoix-Né P, Loeillet S, Nicolas A, Thermes C, Morillon A.

Nature. 2011 Jun 22;475(7354):114-7. doi: 10.1038/nature10118.

PMID:
21697827
[PubMed - indexed for MEDLINE]
3.

Unexpected complexity of the budding yeast transcriptome.

Ito T, Miura F, Onda M.

IUBMB Life. 2008 Dec;60(12):775-81. doi: 10.1002/iub.121. Review.

PMID:
18649367
[PubMed - indexed for MEDLINE]
4.

Experimental annotation of the human pathogen Candida albicans coding and noncoding transcribed regions using high-resolution tiling arrays.

Sellam A, Hogues H, Askew C, Tebbji F, van Het Hoog M, Lavoie H, Kumamoto CA, Whiteway M, Nantel A.

Genome Biol. 2010;11(7):R71. doi: 10.1186/gb-2010-11-7-r71. Epub 2010 Jul 9.

PMID:
20618945
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A high-resolution map of transcription in the yeast genome.

David L, Huber W, Granovskaia M, Toedling J, Palm CJ, Bofkin L, Jones T, Davis RW, Steinmetz LM.

Proc Natl Acad Sci U S A. 2006 Apr 4;103(14):5320-5. Epub 2006 Mar 28.

PMID:
16569694
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A genome-wide transcriptional analysis of the mitotic cell cycle.

Cho RJ, Campbell MJ, Winzeler EA, Steinmetz L, Conway A, Wodicka L, Wolfsberg TG, Gabrielian AE, Landsman D, Lockhart DJ, Davis RW.

Mol Cell. 1998 Jul;2(1):65-73.

PMID:
9702192
[PubMed - indexed for MEDLINE]
Free Article
7.

Genome-wide transcriptome analysis in yeast using high-density tiling arrays.

David L, Clauder-Münster S, Steinmetz LM.

Methods Mol Biol. 2011;759:107-23. doi: 10.1007/978-1-61779-173-4_7.

PMID:
21863484
[PubMed - indexed for MEDLINE]
8.

Bidirectional promoters generate pervasive transcription in yeast.

Xu Z, Wei W, Gagneur J, Perocchi F, Clauder-Münster S, Camblong J, Guffanti E, Stutz F, Huber W, Steinmetz LM.

Nature. 2009 Feb 19;457(7232):1033-7. doi: 10.1038/nature07728. Epub 2009 Jan 25.

PMID:
19169243
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Nutrient-regulated antisense and intragenic RNAs modulate a signal transduction pathway in yeast.

Nishizawa M, Komai T, Katou Y, Shirahige K, Ito T, Toh-E A.

PLoS Biol. 2008 Dec 23;6(12):2817-30. doi: 10.1371/journal.pbio.0060326.

PMID:
19108609
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathway.

Samanta MP, Tongprasit W, Sethi H, Chin CS, Stolc V.

Proc Natl Acad Sci U S A. 2006 Mar 14;103(11):4192-7. Epub 2006 Mar 6.

PMID:
16537507
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Pervasive transcription - Lessons from yeast.

Tisseur M, Kwapisz M, Morillon A.

Biochimie. 2011 Nov;93(11):1889-96. doi: 10.1016/j.biochi.2011.07.001. Epub 2011 Jul 12. Review.

PMID:
21771634
[PubMed - indexed for MEDLINE]
12.

A de novo originated gene depresses budding yeast mating pathway and is repressed by the protein encoded by its antisense strand.

Li D, Dong Y, Jiang Y, Jiang H, Cai J, Wang W.

Cell Res. 2010 Apr;20(4):408-20. doi: 10.1038/cr.2010.31. Epub 2010 Mar 2.

PMID:
20195295
[PubMed - indexed for MEDLINE]
13.

Evidence for abundant transcription of non-coding regions in the Saccharomyces cerevisiae genome.

Havilio M, Levanon EY, Lerman G, Kupiec M, Eisenberg E.

BMC Genomics. 2005 Jun 16;6:93.

PMID:
15960846
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Enrichment of unstable non-coding RNAs and their genome-wide identification.

Neil H, Jacquier A.

Methods Mol Biol. 2011;759:87-106. doi: 10.1007/978-1-61779-173-4_6.

PMID:
21863483
[PubMed - indexed for MEDLINE]
15.

3' Untranslated regions mediate transcriptional interference between convergent genes both locally and ectopically in Saccharomyces cerevisiae.

Wang L, Jiang N, Wang L, Fang O, Leach LJ, Hu X, Luo Z.

PLoS Genet. 2014 Jan;10(1):e1004021. doi: 10.1371/journal.pgen.1004021. Epub 2014 Jan 23.

PMID:
24465217
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Gene silencing CUTs both ways.

Proudfoot N, Gullerova M.

Cell. 2007 Nov 16;131(4):649-51.

PMID:
18022358
[PubMed - indexed for MEDLINE]
Free Article
17.

Antisense expression increases gene expression variability and locus interdependency.

Xu Z, Wei W, Gagneur J, Clauder-Münster S, Smolik M, Huber W, Steinmetz LM.

Mol Syst Biol. 2011 Feb 15;7:468. doi: 10.1038/msb.2011.1.

PMID:
21326235
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Unconventional genomic architecture in the budding yeast saccharomyces cerevisiae masks the nested antisense gene NAG1.

Ma J, Dobry CJ, Krysan DJ, Kumar A.

Eukaryot Cell. 2008 Aug;7(8):1289-98. doi: 10.1128/EC.00053-08. Epub 2008 Feb 29.

PMID:
18310357
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Comparative analysis of structured RNAs in S. cerevisiae indicates a multitude of different functions.

Steigele S, Huber W, Stocsits C, Stadler PF, Nieselt K.

BMC Biol. 2007 Jun 18;5:25.

PMID:
17577407
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Periodic gene expression program of the fission yeast cell cycle.

Rustici G, Mata J, Kivinen K, Lió P, Penkett CJ, Burns G, Hayles J, Brazma A, Nurse P, Bähler J.

Nat Genet. 2004 Aug;36(8):809-17. Epub 2004 Jun 13.

PMID:
15195092
[PubMed - indexed for MEDLINE]

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