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Results: 1 to 20 of 69

1.

PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes.

Ruepp A, Kowarsch A, Schmidl D, Buggenthin F, Brauner B, Dunger I, Fobo G, Frishman G, Montrone C, Theis FJ.

Genome Biol. 2010 Jan 20;11(1):R6. doi: 10.1186/gb-2010-11-1-r6.

PMID:
20089154
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

PhenomiR: microRNAs in human diseases and biological processes.

Ruepp A, Kowarsch A, Theis F.

Methods Mol Biol. 2012;822:249-60. doi: 10.1007/978-1-61779-427-8_17.

PMID:
22144204
[PubMed - indexed for MEDLINE]
3.

A bioinformatics tool for linking gene expression profiling results with public databases of microRNA target predictions.

Creighton CJ, Nagaraja AK, Hanash SM, Matzuk MM, Gunaratne PH.

RNA. 2008 Nov;14(11):2290-6. doi: 10.1261/rna.1188208. Epub 2008 Sep 23.

PMID:
18812437
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Computational analysis of microRNA function in heart development.

Liu G, Ding M, Chen J, Huang J, Wang H, Jing Q, Shen B.

Acta Biochim Biophys Sin (Shanghai). 2010 Sep;42(9):662-70. doi: 10.1093/abbs/gmq072. Epub 2010 Aug 17.

PMID:
20716610
[PubMed - indexed for MEDLINE]
5.

miR2Disease: a manually curated database for microRNA deregulation in human disease.

Jiang Q, Wang Y, Hao Y, Juan L, Teng M, Zhang X, Li M, Wang G, Liu Y.

Nucleic Acids Res. 2009 Jan;37(Database issue):D98-104. doi: 10.1093/nar/gkn714. Epub 2008 Oct 15.

PMID:
18927107
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

In silico analysis of p53 using the p53 knowledgebase: mutations, polymorphisms, microRNAs and pathways.

Yang Y, Tantoso E, Chua GH, Yeo ZX, Ng FS, Wong ST, Chung CW, Li KB.

In Silico Biol. 2007;7(1):61-75.

PMID:
17688428
[PubMed - indexed for MEDLINE]
7.

miReg: a resource for microRNA regulation.

Barh D, Bhat D, Viero C.

J Integr Bioinform. 2010 Aug 6;7(1). doi: 10.2390/biecoll-jib-2010-144.

PMID:
20693604
[PubMed - indexed for MEDLINE]
8.

TransmiR: a transcription factor-microRNA regulation database.

Wang J, Lu M, Qiu C, Cui Q.

Nucleic Acids Res. 2010 Jan;38(Database issue):D119-22. doi: 10.1093/nar/gkp803. Epub 2009 Sep 28.

PMID:
19786497
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The microRNA.org resource: targets and expression.

Betel D, Wilson M, Gabow A, Marks DS, Sander C.

Nucleic Acids Res. 2008 Jan;36(Database issue):D149-53. Epub 2007 Dec 23.

PMID:
18158296
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Filtering of false positive microRNA candidates by a clustering-based approach.

Leung WS, Lin MC, Cheung DW, Yiu SM.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S3. doi: 10.1186/1471-2105-9-S12-S3.

PMID:
19091026
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Cepred: predicting the co-expression patterns of the human intronic microRNAs with their host genes.

Wang D, Lu M, Miao J, Li T, Wang E, Cui Q.

PLoS One. 2009;4(2):e4421. doi: 10.1371/journal.pone.0004421. Epub 2009 Feb 10.

PMID:
19204784
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Ontology-oriented retrieval of putative microRNAs in Vitis vinifera via GrapeMiRNA: a web database of de novo predicted grape microRNAs.

Lazzari B, Caprera A, Cestaro A, Merelli I, Del Corvo M, Fontana P, Milanesi L, Velasco R, Stella A.

BMC Plant Biol. 2009 Jun 29;9:82. doi: 10.1186/1471-2229-9-82.

PMID:
19563653
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

MicroRNA identification based on sequence and structure alignment.

Wang X, Zhang J, Li F, Gu J, He T, Zhang X, Li Y.

Bioinformatics. 2005 Sep 15;21(18):3610-4. Epub 2005 Jun 30.

PMID:
15994192
[PubMed - indexed for MEDLINE]
Free Article
14.

DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis.

Sherman BT, Huang da W, Tan Q, Guo Y, Bour S, Liu D, Stephens R, Baseler MW, Lane HC, Lempicki RA.

BMC Bioinformatics. 2007 Nov 2;8:426.

PMID:
17980028
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

GeneSigDB--a curated database of gene expression signatures.

Culhane AC, Schwarzl T, Sultana R, Picard KC, Picard SC, Lu TH, Franklin KR, French SJ, Papenhausen G, Correll M, Quackenbush J.

Nucleic Acids Res. 2010 Jan;38(Database issue):D716-25. doi: 10.1093/nar/gkp1015. Epub 2009 Nov 24.

PMID:
19934259
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

microRNA: human disease and development.

Gomase VS, Parundekar AN.

Int J Bioinform Res Appl. 2009;5(5):479-500.

PMID:
19778865
[PubMed - indexed for MEDLINE]
17.

DEEP--a tool for differential expression effector prediction.

Degenhardt J, Haubrock M, Dönitz J, Wingender E, Crass T.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W619-24. Epub 2007 Jun 21.

PMID:
17584786
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Comparisons of graph-structure clustering methods for gene expression data.

Fang Z, Liu L, Yang J, Luo QM, Li YX.

Acta Biochim Biophys Sin (Shanghai). 2006 Jun;38(6):379-84.

PMID:
16761095
[PubMed - indexed for MEDLINE]
Free Article
19.

DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists.

Huang da W, Sherman BT, Tan Q, Kir J, Liu D, Bryant D, Guo Y, Stephens R, Baseler MW, Lane HC, Lempicki RA.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W169-75. Epub 2007 Jun 18.

PMID:
17576678
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

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