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Results: 1 to 20 of 107

1.

Integrating phenotype ontologies across multiple species.

Mungall CJ, Gkoutos GV, Smith CL, Haendel MA, Lewis SE, Ashburner M.

Genome Biol. 2010 Jan 8;11(1):R2. doi: 10.1186/gb-2010-11-1-r2.

PMID:
20064205
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature.

Dahdul WM, Balhoff JP, Engeman J, Grande T, Hilton EJ, Kothari C, Lapp H, Lundberg JG, Midford PE, Vision TJ, Westerfield M, Mabee PM.

PLoS One. 2010 May 20;5(5):e10708. doi: 10.1371/journal.pone.0010708.

PMID:
20505755
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Animal trait ontology: The importance and usefulness of a unified trait vocabulary for animal species.

Hughes LM, Bao J, Hu ZL, Honavar V, Reecy JM.

J Anim Sci. 2008 Jun;86(6):1485-91. doi: 10.2527/jas.2008-0930. Epub 2008 Feb 13.

PMID:
18272850
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

A Chado case study: an ontology-based modular schema for representing genome-associated biological information.

Mungall CJ, Emmert DB; FlyBase Consortium.

Bioinformatics. 2007 Jul 1;23(13):i337-46.

PMID:
17646315
[PubMed - indexed for MEDLINE]
Free Article
5.

PhenoGO: an integrated resource for the multiscale mining of clinical and biological data.

Sam LT, Mendonça EA, Li J, Blake J, Friedman C, Lussier YA.

BMC Bioinformatics. 2009 Feb 5;10 Suppl 2:S8. doi: 10.1186/1471-2105-10-S2-S8.

PMID:
19208196
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Ontological Discovery Environment: a system for integrating gene-phenotype associations.

Baker EJ, Jay JJ, Philip VM, Zhang Y, Li Z, Kirova R, Langston MA, Chesler EJ.

Genomics. 2009 Dec;94(6):377-87. doi: 10.1016/j.ygeno.2009.08.016. Epub 2009 Sep 3.

PMID:
19733230
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Representing default knowledge in biomedical ontologies: application to the integration of anatomy and phenotype ontologies.

Hoehndorf R, Loebe F, Kelso J, Herre H.

BMC Bioinformatics. 2007 Oct 9;8:377.

PMID:
17925014
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Practical application of ontologies to annotate and analyse large scale raw mouse phenotype data.

Beck T, Morgan H, Blake A, Wells S, Hancock JM, Mallon AM.

BMC Bioinformatics. 2009 May 6;10 Suppl 5:S2. doi: 10.1186/1471-2105-10-S5-S2.

PMID:
19426459
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Searching the Mouse Genome Informatics (MGI) resources for information on mouse biology from genotype to phenotype.

Shaw DR.

Curr Protoc Bioinformatics. 2009 Mar;Chapter 1:Unit1.7. doi: 10.1002/0471250953.bi0107s25.

PMID:
19274630
[PubMed - indexed for MEDLINE]
10.

Searching the Mouse Genome Informatics (MGI) resources for information on mouse biology from genotype to phenotype.

Shaw D.

Curr Protoc Bioinformatics. 2004 May;Chapter 1:Unit 1.7. doi: 10.1002/0471250953.bi0107s05.

PMID:
18428715
[PubMed - indexed for MEDLINE]
11.

A gross anatomy ontology for hymenoptera.

Yoder MJ, Mikó I, Seltmann KC, Bertone MA, Deans AR.

PLoS One. 2010 Dec 29;5(12):e15991. doi: 10.1371/journal.pone.0015991.

PMID:
21209921
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Improving ontologies by automatic reasoning and evaluation of logical definitions.

Köhler S, Bauer S, Mungall CJ, Carletti G, Smith CL, Schofield P, Gkoutos GV, Robinson PN.

BMC Bioinformatics. 2011 Oct 27;12:418. doi: 10.1186/1471-2105-12-418.

PMID:
22032770
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.

Haendel MA, Balhoff JP, Bastian FB, Blackburn DC, Blake JA, Bradford Y, Comte A, Dahdul WM, Dececchi TA, Druzinsky RE, Hayamizu TF, Ibrahim N, Lewis SE, Mabee PM, Niknejad A, Robinson-Rechavi M, Sereno PC, Mungall CJ.

J Biomed Semantics. 2014 May 19;5:21. doi: 10.1186/2041-1480-5-21. eCollection 2014.

PMID:
25009735
[PubMed]
Free PMC Article
14.

Uberon, an integrative multi-species anatomy ontology.

Mungall CJ, Torniai C, Gkoutos GV, Lewis SE, Haendel MA.

Genome Biol. 2012 Jan 31;13(1):R5. doi: 10.1186/gb-2012-13-1-r5.

PMID:
22293552
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Phenex: ontological annotation of phenotypic diversity.

Balhoff JP, Dahdul WM, Kothari CR, Lapp H, Lundberg JG, Mabee P, Midford PE, Westerfield M, Vision TJ.

PLoS One. 2010 May 5;5(5):e10500. doi: 10.1371/journal.pone.0010500.

PMID:
20463926
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Entity/quality-based logical definitions for the human skeletal phenome using PATO.

Gkoutos GV, Mungall C, Dolken S, Ashburner M, Lewis S, Hancock J, Schofield P, Kohler S, Robinson PN.

Conf Proc IEEE Eng Med Biol Soc. 2009;2009:7069-72. doi: 10.1109/IEMBS.2009.5333362.

PMID:
19964203
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The mouse genome database (MGD): new features facilitating a model system.

Eppig JT, Blake JA, Bult CJ, Kadin JA, Richardson JE; Mouse Genome Database Group.

Nucleic Acids Res. 2007 Jan;35(Database issue):D630-7. Epub 2006 Nov 29.

PMID:
17135206
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Building mouse phenotype ontologies.

Gkoutos GV, Green EC, Mallon AM, Hancock JM, Davidson D.

Pac Symp Biocomput. 2004:178-89.

PMID:
14992502
[PubMed - indexed for MEDLINE]
19.

The chemical information ontology: provenance and disambiguation for chemical data on the biological semantic web.

Hastings J, Chepelev L, Willighagen E, Adams N, Steinbeck C, Dumontier M.

PLoS One. 2011;6(10):e25513. doi: 10.1371/journal.pone.0025513. Epub 2011 Oct 3.

PMID:
21991315
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Ontology annotation: mapping genomic regions to biological function.

Thomas PD, Mi H, Lewis S.

Curr Opin Chem Biol. 2007 Feb;11(1):4-11. Epub 2007 Jan 5. Review.

PMID:
17208035
[PubMed - indexed for MEDLINE]

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