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Results: 1 to 20 of 93

1.

BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources.

Wu C, Orozco C, Boyer J, Leglise M, Goodale J, Batalov S, Hodge CL, Haase J, Janes J, Huss JW 3rd, Su AI.

Genome Biol. 2009;10(11):R130. doi: 10.1186/gb-2009-10-11-r130. Epub 2009 Nov 17.

PMID:
19919682
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

BioGPS and MyGene.info: organizing online, gene-centric information.

Wu C, Macleod I, Su AI.

Nucleic Acids Res. 2013 Jan;41(Database issue):D561-5. doi: 10.1093/nar/gks1114. Epub 2012 Nov 21.

PMID:
23175613
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis.

Sherman BT, Huang da W, Tan Q, Guo Y, Bour S, Liu D, Stephens R, Baseler MW, Lane HC, Lempicki RA.

BMC Bioinformatics. 2007 Nov 2;8:426.

PMID:
17980028
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The Gene Wiki: community intelligence applied to human gene annotation.

Huss JW 3rd, Lindenbaum P, Martone M, Roberts D, Pizarro A, Valafar F, Hogenesch JB, Su AI.

Nucleic Acids Res. 2010 Jan;38(Database issue):D633-9. doi: 10.1093/nar/gkp760. Epub 2009 Sep 15.

PMID:
19755503
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

GeneKeyDB: a lightweight, gene-centric, relational database to support data mining environments.

Kirov SA, Peng X, Baker E, Schmoyer D, Zhang B, Snoddy J.

BMC Bioinformatics. 2005 Mar 24;6:72.

PMID:
15790402
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

GeneNotes--a novel information management software for biologists.

Hong P, Wong WH.

BMC Bioinformatics. 2005 Feb 1;6:20.

PMID:
15686593
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

MILANO--custom annotation of microarray results using automatic literature searches.

Rubinstein R, Simon I.

BMC Bioinformatics. 2005 Jan 20;6:12.

PMID:
15661078
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists.

Huang da W, Sherman BT, Tan Q, Kir J, Liu D, Bryant D, Guo Y, Stephens R, Baseler MW, Lane HC, Lempicki RA.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W169-75. Epub 2007 Jun 18.

PMID:
17576678
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Inherited disorder phenotypes: controlled annotation and statistical analysis for knowledge mining from gene lists.

Masseroli M, Galati O, Manzotti M, Gibert K, Pinciroli F.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S18.

PMID:
16351744
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The Gene Ontology in 2010: extensions and refinements.

Gene Ontology Consortium.

Nucleic Acids Res. 2010 Jan;38(Database issue):D331-5. doi: 10.1093/nar/gkp1018. Epub 2009 Nov 17.

PMID:
19920128
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

SoyBase, the USDA-ARS soybean genetics and genomics database.

Grant D, Nelson RT, Cannon SB, Shoemaker RC.

Nucleic Acids Res. 2010 Jan;38(Database issue):D843-6. doi: 10.1093/nar/gkp798. Epub 2009 Dec 14.

PMID:
20008513
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

BioBuilder as a database development and functional annotation platform for proteins.

Navarro JD, Talreja N, Peri S, Vrushabendra BM, Rashmi BP, Padma N, Surendranath V, Jonnalagadda CK, Kousthub PS, Deshpande N, Shanker K, Pandey A.

BMC Bioinformatics. 2004 Apr 20;5:43.

PMID:
15099404
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.

Latorre M, Silva H, Saba J, Guziolowski C, Vizoso P, Martinez V, Maldonado J, Morales A, Caroca R, Cambiazo V, Campos-Vargas R, Gonzalez M, Orellana A, Retamales J, Meisel LA.

BMC Bioinformatics. 2006 Nov 23;7:513.

PMID:
17123449
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

An overview of the BioExtract Server: a distributed, Web-based system for genomic analysis.

Lushbough CM, Brendel VP.

Adv Exp Med Biol. 2010;680:361-9. doi: 10.1007/978-1-4419-5913-3_41.

PMID:
20865520
[PubMed - indexed for MEDLINE]
15.

GeneLynx: a gene-centric portal to the human genome.

Lenhard B, Hayes WS, Wasserman WW.

Genome Res. 2001 Dec;11(12):2151-7.

PMID:
11731507
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Talisman--rapid application development for the grid.

Oinn TM.

Bioinformatics. 2003;19 Suppl 1:i212-4.

PMID:
12855460
[PubMed - indexed for MEDLINE]
Free Article
17.

Windows .NET Network Distributed Basic Local Alignment Search Toolkit (W.ND-BLAST).

Dowd SE, Zaragoza J, Rodriguez JR, Oliver MJ, Payton PR.

BMC Bioinformatics. 2005 Apr 8;6:93.

PMID:
15819992
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The NCBI BioSystems database.

Geer LY, Marchler-Bauer A, Geer RC, Han L, He J, He S, Liu C, Shi W, Bryant SH.

Nucleic Acids Res. 2010 Jan;38(Database issue):D492-6. doi: 10.1093/nar/gkp858. Epub 2009 Oct 23.

PMID:
19854944
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

CoGenT++: an extensive and extensible data environment for computational genomics.

Goldovsky L, Janssen P, Ahrén D, Audit B, Cases I, Darzentas N, Enright AJ, López-Bigas N, Peregrin-Alvarez JM, Smith M, Tsoka S, Kunin V, Ouzounis CA.

Bioinformatics. 2005 Oct 1;21(19):3806-10.

PMID:
16216832
[PubMed - indexed for MEDLINE]
Free Article
20.

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.

PMID:
17062145
[PubMed - indexed for MEDLINE]
Free PMC Article

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