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Results: 1 to 20 of 75

1.

Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays.

Popova T, Manié E, Stoppa-Lyonnet D, Rigaill G, Barillot E, Stern MH.

Genome Biol. 2009;10(11):R128. doi: 10.1186/gb-2009-10-11-r128. Epub 2009 Nov 11.

PMID:
19903341
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Landscape of somatic allelic imbalances and copy number alterations in HER2-amplified breast cancer.

Staaf J, Jönsson G, Ringnér M, Baldetorp B, Borg A.

Breast Cancer Res. 2011;13(6):R129. doi: 10.1186/bcr3075. Epub 2011 Dec 14.

PMID:
22169037
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

An integrated view of copy number and allelic alterations in the cancer genome using single nucleotide polymorphism arrays.

Zhao X, Li C, Paez JG, Chin K, Jänne PA, Chen TH, Girard L, Minna J, Christiani D, Leo C, Gray JW, Sellers WR, Meyerson M.

Cancer Res. 2004 May 1;64(9):3060-71.

PMID:
15126342
[PubMed - indexed for MEDLINE]
Free Article
4.

Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays.

Staaf J, Lindgren D, Vallon-Christersson J, Isaksson A, Göransson H, Juliusson G, Rosenquist R, Höglund M, Borg A, Ringnér M.

Genome Biol. 2008;9(9):R136. doi: 10.1186/gb-2008-9-9-r136. Epub 2008 Sep 16.

PMID:
18796136
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Combined array-comparative genomic hybridization and single-nucleotide polymorphism-loss of heterozygosity analysis reveals complex genetic alterations in cervical cancer.

Kloth JN, Oosting J, van Wezel T, Szuhai K, Knijnenburg J, Gorter A, Kenter GG, Fleuren GJ, Jordanova ES.

BMC Genomics. 2007 Feb 20;8:53.

PMID:
17311676
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

High-resolution analysis of allelic imbalance in neuroblastoma cell lines by single nucleotide polymorphism arrays.

Carr J, Bown NP, Case MC, Hall AG, Lunec J, Tweddle DA.

Cancer Genet Cytogenet. 2007 Jan 15;172(2):127-38.

PMID:
17213021
[PubMed - indexed for MEDLINE]
7.

Allelic imbalances in human bladder cancer: genome-wide detection with high-density single-nucleotide polymorphism arrays.

Primdahl H, Wikman FP, von der Maase H, Zhou XG, Wolf H, Orntoft TF.

J Natl Cancer Inst. 2002 Feb 6;94(3):216-23.

PMID:
11830611
[PubMed - indexed for MEDLINE]
Free Article
8.

Molecular karyotyping of human hepatocellular carcinoma using single-nucleotide polymorphism arrays.

Midorikawa Y, Yamamoto S, Ishikawa S, Kamimura N, Igarashi H, Sugimura H, Makuuchi M, Aburatani H.

Oncogene. 2006 Sep 7;25(40):5581-90. Epub 2006 Jun 19.

PMID:
16785998
[PubMed - indexed for MEDLINE]
9.

Genome-wide genetic characterization of bladder cancer: a comparison of high-density single-nucleotide polymorphism arrays and PCR-based microsatellite analysis.

Hoque MO, Lee CC, Cairns P, Schoenberg M, Sidransky D.

Cancer Res. 2003 May 1;63(9):2216-22.

PMID:
12727842
[PubMed - indexed for MEDLINE]
Free Article
10.

Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer.

Ha G, Roth A, Lai D, Bashashati A, Ding J, Goya R, Giuliany R, Rosner J, Oloumi A, Shumansky K, Chin SF, Turashvili G, Hirst M, Caldas C, Marra MA, Aparicio S, Shah SP.

Genome Res. 2012 Oct;22(10):1995-2007. doi: 10.1101/gr.137570.112. Epub 2012 May 25.

PMID:
22637570
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Ploidy status and copy number aberrations in primary glioblastomas defined by integrated analysis of allelic ratios, signal ratios and loss of heterozygosity using 500K SNP Mapping Arrays.

Gardina PJ, Lo KC, Lee W, Cowell JK, Turpaz Y.

BMC Genomics. 2008 Oct 17;9:489. doi: 10.1186/1471-2164-9-489.

PMID:
18928532
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genome-wide allelic state analysis on flow-sorted tumor fractions provides an accurate measure of chromosomal aberrations.

Corver WE, Middeldorp A, ter Haar NT, Jordanova ES, van Puijenbroek M, van Eijk R, Cornelisse CJ, Fleuren GJ, Morreau H, Oosting J, van Wezel T.

Cancer Res. 2008 Dec 15;68(24):10333-40. doi: 10.1158/0008-5472.CAN-08-2665.

PMID:
19074902
[PubMed - indexed for MEDLINE]
Free Article
13.

Allelic imbalance analysis of oral tongue squamous cell carcinoma by high-density single nucleotide polymorphism arrays using whole-genome amplified DNA.

Zhou X, Temam S, Chen Z, Ye H, Mao L, Wong DT.

Hum Genet. 2005 Dec;118(3-4):504-7. Epub 2005 Sep 29.

PMID:
16193324
[PubMed - indexed for MEDLINE]
14.

Genome-wide analysis of allelic imbalance in prostate cancer using the Affymetrix 50K SNP mapping array.

Tørring N, Borre M, Sørensen KD, Andersen CL, Wiuf C, Ørntoft TF.

Br J Cancer. 2007 Feb 12;96(3):499-506. Epub 2007 Jan 23.

PMID:
17245344
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Whole genome SNP arrays as a potential diagnostic tool for the detection of characteristic chromosomal aberrations in renal epithelial tumors.

Monzon FA, Hagenkord JM, Lyons-Weiler MA, Balani JP, Parwani AV, Sciulli CM, Li J, Chandran UR, Bastacky SI, Dhir R.

Mod Pathol. 2008 May;21(5):599-608. doi: 10.1038/modpathol.2008.20. Epub 2008 Feb 8.

PMID:
18246049
[PubMed - indexed for MEDLINE]
Free Article
16.
17.

Highly sensitive method for genomewide detection of allelic composition in nonpaired, primary tumor specimens by use of affymetrix single-nucleotide-polymorphism genotyping microarrays.

Yamamoto G, Nannya Y, Kato M, Sanada M, Levine RL, Kawamata N, Hangaishi A, Kurokawa M, Chiba S, Gilliland DG, Koeffler HP, Ogawa S.

Am J Hum Genet. 2007 Jul;81(1):114-26. Epub 2007 Jun 5.

PMID:
17564968
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Comprehensive SNP array study of frequently used neuroblastoma cell lines; copy neutral loss of heterozygosity is common in the cell lines but uncommon in primary tumors.

Kryh H, Carén H, Erichsen J, Sjöberg RM, Abrahamsson J, Kogner P, Martinsson T.

BMC Genomics. 2011 Sep 7;12:443. doi: 10.1186/1471-2164-12-443.

PMID:
21899760
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Inferring loss-of-heterozygosity from unpaired tumors using high-density oligonucleotide SNP arrays.

Beroukhim R, Lin M, Park Y, Hao K, Zhao X, Garraway LA, Fox EA, Hochberg EP, Mellinghoff IK, Hofer MD, Descazeaud A, Rubin MA, Meyerson M, Wong WH, Sellers WR, Li C.

PLoS Comput Biol. 2006 May;2(5):e41. Epub 2006 May 12.

PMID:
16699594
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Allelic imbalance analysis by high-density single-nucleotide polymorphic allele (SNP) array with whole genome amplified DNA.

Wong KK, Tsang YT, Shen J, Cheng RS, Chang YM, Man TK, Lau CC.

Nucleic Acids Res. 2004 May 17;32(9):e69.

PMID:
15148342
[PubMed - indexed for MEDLINE]
Free PMC Article

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