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Results: 1 to 20 of 124

1.

Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness.

Marques AC, Ponting CP.

Genome Biol. 2009;10(11):R124. doi: 10.1186/gb-2009-10-11-r124. Epub 2009 Nov 6.

PMID:
19895688
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Negative correlation between expression level and evolutionary rate of long intergenic noncoding RNAs.

Managadze D, Rogozin IB, Chernikova D, Shabalina SA, Koonin EV.

Genome Biol Evol. 2011;3:1390-404. doi: 10.1093/gbe/evr116. Epub 2011 Nov 9.

PMID:
22071789
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Computational discovery of human coding and non-coding transcripts with conserved splice sites.

Rose D, Hiller M, Schutt K, Hackermüller J, Backofen R, Stadler PF.

Bioinformatics. 2011 Jul 15;27(14):1894-900. doi: 10.1093/bioinformatics/btr314. Epub 2011 May 26.

PMID:
21622663
[PubMed - indexed for MEDLINE]
Free Article
4.

Rapid turnover of long noncoding RNAs and the evolution of gene expression.

Kutter C, Watt S, Stefflova K, Wilson MD, Goncalves A, Ponting CP, Odom DT, Marques AC.

PLoS Genet. 2012;8(7):e1002841. doi: 10.1371/journal.pgen.1002841. Epub 2012 Jul 26.

PMID:
22844254
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Long noncoding RNA genes: conservation of sequence and brain expression among diverse amniotes.

Chodroff RA, Goodstadt L, Sirey TM, Oliver PL, Davies KE, Green ED, Molnár Z, Ponting CP.

Genome Biol. 2010;11(7):R72. doi: 10.1186/gb-2010-11-7-r72. Epub 2010 Jul 12.

PMID:
20624288
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs.

Ponjavic J, Ponting CP, Lunter G.

Genome Res. 2007 May;17(5):556-65. Epub 2007 Mar 26.

PMID:
17387145
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription.

Babak T, Blencowe BJ, Hughes TR.

BMC Genomics. 2005 Aug 5;6:104.

PMID:
16083503
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Biocomputational prediction of non-coding RNAs in model cyanobacteria.

Voss B, Georg J, Schön V, Ude S, Hess WR.

BMC Genomics. 2009 Mar 23;10:123. doi: 10.1186/1471-2164-10-123.

PMID:
19309518
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF.

Genome Res. 2012 Mar;22(3):577-91. doi: 10.1101/gr.133009.111. Epub 2011 Nov 22.

PMID:
22110045
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

An Ariadne's thread to the identification and annotation of noncoding RNAs in eukaryotes.

Soldà G, Makunin IV, Sezerman OU, Corradin A, Corti G, Guffanti A.

Brief Bioinform. 2009 Sep;10(5):475-89. doi: 10.1093/bib/bbp022. Epub 2009 Apr 21. Review.

PMID:
19383843
[PubMed - indexed for MEDLINE]
Free Article
11.

The sequence, structure and evolutionary features of HOTAIR in mammals.

He S, Liu S, Zhu H.

BMC Evol Biol. 2011 Apr 16;11:102. doi: 10.1186/1471-2148-11-102.

PMID:
21496275
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain.

Ponjavic J, Oliver PL, Lunter G, Ponting CP.

PLoS Genet. 2009 Aug;5(8):e1000617. doi: 10.1371/journal.pgen.1000617. Epub 2009 Aug 21.

PMID:
19696892
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Characterization of the RNA content of chromatin.

Mondal T, Rasmussen M, Pandey GK, Isaksson A, Kanduri C.

Genome Res. 2010 Jul;20(7):899-907. doi: 10.1101/gr.103473.109. Epub 2010 Apr 19.

PMID:
20404130
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Comprehensive characterization of 10,571 mouse large intergenic noncoding RNAs from whole transcriptome sequencing.

Luo H, Sun S, Li P, Bu D, Cao H, Zhao Y.

PLoS One. 2013 Aug 12;8(8):e70835. doi: 10.1371/journal.pone.0070835. eCollection 2013.

PMID:
23951020
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs.

Guttman M, Garber M, Levin JZ, Donaghey J, Robinson J, Adiconis X, Fan L, Koziol MJ, Gnirke A, Nusbaum C, Rinn JL, Lander ES, Regev A.

Nat Biotechnol. 2010 May;28(5):503-10. doi: 10.1038/nbt.1633. Epub 2010 May 2. Erratum in: Nat Biotechnol. 2010 Jul;28(7):756.

PMID:
20436462
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains.

Hutchinson JN, Ensminger AW, Clemson CM, Lynch CR, Lawrence JB, Chess A.

BMC Genomics. 2007 Feb 1;8:39.

PMID:
17270048
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A global clustering algorithm to identify long intergenic non-coding RNA--with applications in mouse macrophages.

Garmire LX, Garmire DG, Huang W, Yao J, Glass CK, Subramaniam S.

PLoS One. 2011;6(9):e24051. doi: 10.1371/journal.pone.0024051. Epub 2011 Sep 30.

PMID:
21980340
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Computational evidence for functionality of noncoding mouse transcripts.

Lebenthal I, Unger R.

Genomics. 2010 Jul;96(1):10-6. doi: 10.1016/j.ygeno.2010.03.008. Epub 2010 Mar 25.

PMID:
20347031
[PubMed - indexed for MEDLINE]
Free Article
19.

Identification of putative noncoding RNAs among the RIKEN mouse full-length cDNA collection.

Numata K, Kanai A, Saito R, Kondo S, Adachi J, Wilming LG, Hume DA, Hayashizaki Y, Tomita M; RIKEN GER Group; GSL Members.

Genome Res. 2003 Jun;13(6B):1301-6.

PMID:
12819127
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Conserved introns reveal novel transcripts in Drosophila melanogaster.

Hiller M, Findeiss S, Lein S, Marz M, Nickel C, Rose D, Schulz C, Backofen R, Prohaska SJ, Reuter G, Stadler PF.

Genome Res. 2009 Jul;19(7):1289-300. doi: 10.1101/gr.090050.108. Epub 2009 May 20.

PMID:
19458021
[PubMed - indexed for MEDLINE]
Free PMC Article

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