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Results: 1 to 20 of 92

1.

Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts.

Levin JZ, Berger MF, Adiconis X, Rogov P, Melnikov A, Fennell T, Nusbaum C, Garraway LA, Gnirke A.

Genome Biol. 2009;10(10):R115. doi: 10.1186/gb-2009-10-10-r115. Epub 2009 Oct 16.

PMID:
19835606
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Chimeric transcript discovery by paired-end transcriptome sequencing.

Maher CA, Palanisamy N, Brenner JC, Cao X, Kalyana-Sundaram S, Luo S, Khrebtukova I, Barrette TR, Grasso C, Yu J, Lonigro RJ, Schroth G, Kumar-Sinha C, Chinnaiyan AM.

Proc Natl Acad Sci U S A. 2009 Jul 28;106(30):12353-8. doi: 10.1073/pnas.0904720106. Epub 2009 Jul 10.

PMID:
19592507
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Next-generation tag sequencing for cancer gene expression profiling.

Morrissy AS, Morin RD, Delaney A, Zeng T, McDonald H, Jones S, Zhao Y, Hirst M, Marra MA.

Genome Res. 2009 Oct;19(10):1825-35. doi: 10.1101/gr.094482.109. Epub 2009 Jun 18.

PMID:
19541910
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

High-throughput resequencing of target-captured cDNA in cancer cells.

Ueno T, Yamashita Y, Soda M, Fukumura K, Ando M, Yamato A, Kawazu M, Choi YL, Mano H.

Cancer Sci. 2012 Jan;103(1):131-5. doi: 10.1111/j.1349-7006.2011.02105.x. Epub 2011 Oct 13.

PMID:
21929543
[PubMed - indexed for MEDLINE]
5.

Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach.

Bainbridge MN, Warren RL, Hirst M, Romanuik T, Zeng T, Go A, Delaney A, Griffith M, Hickenbotham M, Magrini V, Mardis ER, Sadar MD, Siddiqui AS, Marra MA, Jones SJ.

BMC Genomics. 2006 Sep 29;7:246.

PMID:
17010196
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Identification of sequence variants in genetic disease-causing genes using targeted next-generation sequencing.

Wei X, Ju X, Yi X, Zhu Q, Qu N, Liu T, Chen Y, Jiang H, Yang G, Zhen R, Lan Z, Qi M, Wang J, Yang Y, Chu Y, Li X, Guang Y, Huang J.

PLoS One. 2011;6(12):e29500. doi: 10.1371/journal.pone.0029500. Epub 2011 Dec 21.

PMID:
22216297
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

In-depth cDNA library sequencing provides quantitative gene expression profiling in cancer biomarker discovery.

Yang W, Ying D, Lau YL.

Genomics Proteomics Bioinformatics. 2009 Jun;7(1-2):1-12. doi: 10.1016/S1672-0229(09)00003-5.

PMID:
19591787
[PubMed - indexed for MEDLINE]
Free Article
8.

A transcriptional sketch of a primary human breast cancer by 454 deep sequencing.

Guffanti A, Iacono M, Pelucchi P, Kim N, Soldà G, Croft LJ, Taft RJ, Rizzi E, Askarian-Amiri M, Bonnal RJ, Callari M, Mignone F, Pesole G, Bertalot G, Bernardi LR, Albertini A, Lee C, Mattick JS, Zucchi I, De Bellis G.

BMC Genomics. 2009 Apr 20;10:163. doi: 10.1186/1471-2164-10-163.

PMID:
19379481
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Deep sequencing in cancer research.

Yoshida K, Sanada M, Ogawa S.

Jpn J Clin Oncol. 2013 Feb;43(2):110-5. doi: 10.1093/jjco/hys206. Epub 2012 Dec 5. Review.

PMID:
23225907
[PubMed - indexed for MEDLINE]
Free Article
10.

A comparison of single molecule and amplification based sequencing of cancer transcriptomes.

Sam LT, Lipson D, Raz T, Cao X, Thompson J, Milos PM, Robinson D, Chinnaiyan AM, Kumar-Sinha C, Maher CA.

PLoS One. 2011 Mar 1;6(3):e17305. doi: 10.1371/journal.pone.0017305.

PMID:
21390249
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Transcriptome sequencing to detect gene fusions in cancer.

Maher CA, Kumar-Sinha C, Cao X, Kalyana-Sundaram S, Han B, Jing X, Sam L, Barrette T, Palanisamy N, Chinnaiyan AM.

Nature. 2009 Mar 5;458(7234):97-101. doi: 10.1038/nature07638. Epub 2009 Jan 11.

PMID:
19136943
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

RNA-Seq: revelation of the messengers.

Van Verk MC, Hickman R, Pieterse CM, Van Wees SC.

Trends Plant Sci. 2013 Apr;18(4):175-9. doi: 10.1016/j.tplants.2013.02.001. Epub 2013 Mar 5.

PMID:
23481128
[PubMed - indexed for MEDLINE]
13.

Next-generation transcriptome assembly.

Martin JA, Wang Z.

Nat Rev Genet. 2011 Sep 7;12(10):671-82. doi: 10.1038/nrg3068. Review.

PMID:
21897427
[PubMed - indexed for MEDLINE]
14.

Targeted next-generation sequencing detects point mutations, insertions, deletions and balanced chromosomal rearrangements as well as identifies novel leukemia-specific fusion genes in a single procedure.

Grossmann V, Kohlmann A, Klein HU, Schindela S, Schnittger S, Dicker F, Dugas M, Kern W, Haferlach T, Haferlach C.

Leukemia. 2011 Apr;25(4):671-80. doi: 10.1038/leu.2010.309. Epub 2011 Jan 21.

PMID:
21252984
[PubMed - indexed for MEDLINE]
15.

Ribosomal footprints on a transcriptome landscape.

Morris DR.

Genome Biol. 2009;10(4):215. doi: 10.1186/gb-2009-10-4-215. Epub 2009 Apr 28. Review.

PMID:
19439030
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Generation of a large catalog of unique transcripts for whole-genome expression analysis in nonmodel species.

Bellin D, Ferrarini A, Delledonne M.

Methods Mol Biol. 2011;729:257-69. doi: 10.1007/978-1-61779-065-2_17.

PMID:
21365496
[PubMed - indexed for MEDLINE]
17.

Discovery of novel human transcript variants by analysis of intronic single-block EST with polyadenylation site.

Wang P, Yu P, Gao P, Shi T, Ma D.

BMC Genomics. 2009 Nov 12;10:518. doi: 10.1186/1471-2164-10-518.

PMID:
19906316
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Full-length transcriptome analysis using a bias-free cDNA library prepared with the vector-capping method.

Kato S, Oshikawa M, Ohtoko K.

Methods Mol Biol. 2011;729:53-70. doi: 10.1007/978-1-61779-065-2_4.

PMID:
21365483
[PubMed - indexed for MEDLINE]
19.

Discovery of differentially expressed genes in human breast cancer using subtracted cDNA libraries and cDNA microarrays.

Jiang Y, Harlocker SL, Molesh DA, Dillon DC, Stolk JA, Houghton RL, Repasky EA, Badaro R, Reed SG, Xu J.

Oncogene. 2002 Mar 28;21(14):2270-82.

PMID:
11948410
[PubMed - indexed for MEDLINE]
Free Article
20.

Differential expression of multiple isoforms of the ELKS mRNAs involved in a papillary thyroid carcinoma.

Nakata T, Yokota T, Emi M, Minami S.

Genes Chromosomes Cancer. 2002 Sep;35(1):30-7.

PMID:
12203787
[PubMed - indexed for MEDLINE]

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