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Results: 1 to 20 of 347

1.

Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions.

Carrera J, Rodrigo G, Jaramillo A, Elena SF.

Genome Biol. 2009;10(9):R96. doi: 10.1186/gb-2009-10-9-r96. Epub 2009 Sep 15.

PMID:
19754933
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Consensus by democracy. Using meta-analyses of microarray and genomic data to model the cold acclimation signaling pathway in Arabidopsis.

Benedict C, Geisler M, Trygg J, Huner N, Hurry V.

Plant Physiol. 2006 Aug;141(4):1219-32.

PMID:
16896234
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

A gene regulatory network controlled by the NAC transcription factor ANAC092/AtNAC2/ORE1 during salt-promoted senescence.

Balazadeh S, Siddiqui H, Allu AD, Matallana-Ramirez LP, Caldana C, Mehrnia M, Zanor MI, Köhler B, Mueller-Roeber B.

Plant J. 2010 Apr;62(2):250-64. doi: 10.1111/j.1365-313X.2010.04151.x. Epub 2010 Jan 22.

PMID:
20113437
[PubMed - indexed for MEDLINE]
4.

Functional-genomics-based identification of genes that regulate Arabidopsis responses to multiple abiotic stresses.

Kant P, Gordon M, Kant S, Zolla G, Davydov O, Heimer YM, Chalifa-Caspi V, Shaked R, Barak S.

Plant Cell Environ. 2008 Jun;31(6):697-714. doi: 10.1111/j.1365-3040.2008.01779.x. Epub 2008 Mar 4.

PMID:
18182014
[PubMed - indexed for MEDLINE]
5.

The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses.

Kilian J, Whitehead D, Horak J, Wanke D, Weinl S, Batistic O, D'Angelo C, Bornberg-Bauer E, Kudla J, Harter K.

Plant J. 2007 Apr;50(2):347-63. Epub 2007 Mar 21.

PMID:
17376166
[PubMed - indexed for MEDLINE]
6.

Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions.

Bassel GW, Lan H, Glaab E, Gibbs DJ, Gerjets T, Krasnogor N, Bonner AJ, Holdsworth MJ, Provart NJ.

Proc Natl Acad Sci U S A. 2011 Jun 7;108(23):9709-14. doi: 10.1073/pnas.1100958108. Epub 2011 May 18.

PMID:
21593420
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Regulatory network identification by genetical genomics: signaling downstream of the Arabidopsis receptor-like kinase ERECTA.

Terpstra IR, Snoek LB, Keurentjes JJ, Peeters AJ, van den Ackerveken G.

Plant Physiol. 2010 Nov;154(3):1067-78. doi: 10.1104/pp.110.159996. Epub 2010 Sep 10.

PMID:
20833726
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Dissecting the plant transcriptome and the regulatory responses to phosphate deprivation.

Nilsson L, Müller R, Nielsen TH.

Physiol Plant. 2010 Jun 1;139(2):129-43. doi: 10.1111/j.1399-3054.2010.01356.x. Epub 2010 Jan 25. Review.

PMID:
20113436
[PubMed - indexed for MEDLINE]
9.

A genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants.

Wang D, Amornsiripanitch N, Dong X.

PLoS Pathog. 2006 Nov;2(11):e123.

PMID:
17096590
[PubMed - indexed for MEDLINE]
Free PMC Article
10.
11.

Computational identification and analysis of immune-associated nucleotide gene family in Arabidopsis thaliana.

Liu C, Wang T, Zhang W, Li X.

J Plant Physiol. 2008 May 5;165(7):777-87. Epub 2007 Aug 27.

PMID:
17723251
[PubMed - indexed for MEDLINE]
12.

Ectopic expression of MYB46 identifies transcriptional regulatory genes involved in secondary wall biosynthesis in Arabidopsis.

Ko JH, Kim WC, Han KH.

Plant J. 2009 Nov;60(4):649-65. doi: 10.1111/j.1365-313X.2009.03989.x. Epub 2009 Aug 6.

PMID:
19674407
[PubMed - indexed for MEDLINE]
13.

Expression profiling and mutant analysis reveals complex regulatory networks involved in Arabidopsis response to Botrytis infection.

AbuQamar S, Chen X, Dhawan R, Bluhm B, Salmeron J, Lam S, Dietrich RA, Mengiste T.

Plant J. 2006 Oct;48(1):28-44. Epub 2006 Aug 22.

PMID:
16925600
[PubMed - indexed for MEDLINE]
14.

Transcriptional changes in response to growth of Arabidopsis in high external calcium.

Chan CW, Wohlbach DJ, Rodesch MJ, Sussman MR.

FEBS Lett. 2008 Mar 19;582(6):967-76. doi: 10.1016/j.febslet.2008.02.043. Epub 2008 Feb 26.

PMID:
18307990
[PubMed - indexed for MEDLINE]
Free Article
15.

Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis.

Gutiérrez RA, Lejay LV, Dean A, Chiaromonte F, Shasha DE, Coruzzi GM.

Genome Biol. 2007;8(1):R7.

PMID:
17217541
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana.

Yu X, Li L, Zola J, Aluru M, Ye H, Foudree A, Guo H, Anderson S, Aluru S, Liu P, Rodermel S, Yin Y.

Plant J. 2011 Feb;65(4):634-46. doi: 10.1111/j.1365-313X.2010.04449.x. Epub 2011 Jan 10.

PMID:
21214652
[PubMed - indexed for MEDLINE]
17.

Coexpression characteristics of trehalose-6-phosphate phosphatase subfamily genes reveal different functions in a network context.

Li P, Ma S, Bohnert HJ.

Physiol Plant. 2008 Jul;133(3):544-56. doi: 10.1111/j.1399-3054.2008.01101.x. Epub 2008 Jul 1.

PMID:
18435695
[PubMed - indexed for MEDLINE]
18.

Genome-wide analysis of hydrogen peroxide-regulated gene expression in Arabidopsis reveals a high light-induced transcriptional cluster involved in anthocyanin biosynthesis.

Vanderauwera S, Zimmermann P, Rombauts S, Vandenabeele S, Langebartels C, Gruissem W, Inzé D, Van Breusegem F.

Plant Physiol. 2005 Oct;139(2):806-21. Epub 2005 Sep 23.

PMID:
16183842
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genome-wide identification of osmotic stress response gene in Arabidopsis thaliana.

Li Y, Zhu Y, Liu Y, Shu Y, Meng F, Lu Y, Bai X, Liu B, Guo D.

Genomics. 2008 Dec;92(6):488-93. doi: 10.1016/j.ygeno.2008.08.011. Epub 2008 Oct 1.

PMID:
18804526
[PubMed - indexed for MEDLINE]
Free Article
20.

MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress.

Arora R, Agarwal P, Ray S, Singh AK, Singh VP, Tyagi AK, Kapoor S.

BMC Genomics. 2007 Jul 18;8:242.

PMID:
17640358
[PubMed - indexed for MEDLINE]
Free PMC Article

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