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Results: 1 to 20 of 72

1.

Nucleosome deposition and DNA methylation at coding region boundaries.

Choi JK, Bae JB, Lyu J, Kim TY, Kim YJ.

Genome Biol. 2009;10(9):R89. doi: 10.1186/gb-2009-10-9-r89. Epub 2009 Sep 1.

PMID:
19723310
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

CpG island clusters and pro-epigenetic selection for CpGs in protein-coding exons of HOX and other transcription factors.

Branciamore S, Chen ZX, Riggs AD, Rodin SN.

Proc Natl Acad Sci U S A. 2010 Aug 31;107(35):15485-90. doi: 10.1073/pnas.1010506107. Epub 2010 Aug 17.

PMID:
20716685
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Effects of DNA methylation on nucleosome stability.

Collings CK, Waddell PJ, Anderson JN.

Nucleic Acids Res. 2013 Mar 1;41(5):2918-31. doi: 10.1093/nar/gks893. Epub 2013 Jan 25.

PMID:
23355616
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Genome-wide association between DNA methylation and alternative splicing in an invertebrate.

Flores K, Wolschin F, Corneveaux JJ, Allen AN, Huentelman MJ, Amdam GV.

BMC Genomics. 2012 Sep 15;13:480. doi: 10.1186/1471-2164-13-480.

PMID:
22978521
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

High resolution methylome map of rat indicates role of intragenic DNA methylation in identification of coding region.

Sati S, Tanwar VS, Kumar KA, Patowary A, Jain V, Ghosh S, Ahmad S, Singh M, Reddy SU, Chandak GR, Raghunath M, Sivasubbu S, Chakraborty K, Scaria V, Sengupta S.

PLoS One. 2012;7(2):e31621. doi: 10.1371/journal.pone.0031621. Epub 2012 Feb 15.

PMID:
22355382
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Site-specific methylation in gene coding region underlies transcriptional silencing of the Phytochrome A epiallele in Arabidopsis thaliana.

Rangani G, Khodakovskaya M, Alimohammadi M, Hoecker U, Srivastava V.

Plant Mol Biol. 2012 May;79(1-2):191-202. doi: 10.1007/s11103-012-9906-1. Epub 2012 Apr 1.

PMID:
22466452
[PubMed - indexed for MEDLINE]
7.

Nucleosome positioning signals in the DNA sequence of the human and mouse H19 imprinting control regions.

Davey C, Fraser R, Smolle M, Simmen MW, Allan J.

J Mol Biol. 2003 Jan 31;325(5):873-87.

PMID:
12527297
[PubMed - indexed for MEDLINE]
8.

Widespread remodeling of mid-coding sequence nucleosomes by Isw1.

Tirosh I, Sigal N, Barkai N.

Genome Biol. 2010;11(5):R49. doi: 10.1186/gb-2010-11-5-r49. Epub 2010 May 10.

PMID:
20459718
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Effects of DNA methylation on the structure of nucleosomes.

Lee JY, Lee TH.

J Am Chem Soc. 2012 Jan 11;134(1):173-5. doi: 10.1021/ja210273w. Epub 2011 Dec 15.

PMID:
22148575
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Function and evolution of DNA methylation in Nasonia vitripennis.

Wang X, Wheeler D, Avery A, Rago A, Choi JH, Colbourne JK, Clark AG, Werren JH.

PLoS Genet. 2013;9(10):e1003872. doi: 10.1371/journal.pgen.1003872. Epub 2013 Oct 10.

PMID:
24130511
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genome-wide nucleosome mapping of Plasmodium falciparum reveals histone-rich coding and histone-poor intergenic regions and chromatin remodeling of core and subtelomeric genes.

Westenberger SJ, Cui L, Dharia N, Winzeler E, Cui L.

BMC Genomics. 2009 Dec 16;10:610. doi: 10.1186/1471-2164-10-610.

PMID:
20015349
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A novel mechanism of epigenetic regulation: nucleosome-space occupancy.

Cui P, Zhang L, Lin Q, Ding F, Xin C, Fang X, Hu S, Yu J.

Biochem Biophys Res Commun. 2010 Jan 1;391(1):884-9. doi: 10.1016/j.bbrc.2009.11.157. Epub 2009 Dec 3.

PMID:
19948147
[PubMed - indexed for MEDLINE]
13.

A determining influence for CpG dinucleotides on nucleosome positioning in vitro.

Davey CS, Pennings S, Reilly C, Meehan RR, Allan J.

Nucleic Acids Res. 2004 Aug 13;32(14):4322-31. Print 2004.

PMID:
15310836
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Intergenic, gene terminal, and intragenic CpG islands in the human genome.

Medvedeva YA, Fridman MV, Oparina NJ, Malko DB, Ermakova EO, Kulakovskiy IV, Heinzel A, Makeev VJ.

BMC Genomics. 2010 Jan 19;11:48. doi: 10.1186/1471-2164-11-48.

PMID:
20085634
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The evolution of the coding exome of the Arabidopsis species--the influences of DNA methylation, relative exon position, and exon length.

Chen FC, Chuang TJ, Lin HY, Hsu MK.

BMC Evol Biol. 2014 Jun 25;14:145. doi: 10.1186/1471-2148-14-145.

PMID:
24965500
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing.

Shukla S, Kavak E, Gregory M, Imashimizu M, Shutinoski B, Kashlev M, Oberdoerffer P, Sandberg R, Oberdoerffer S.

Nature. 2011 Nov 3;479(7371):74-9. doi: 10.1038/nature10442.

PMID:
21964334
[PubMed - indexed for MEDLINE]
17.

Position-dependent correlations between DNA methylation and the evolutionary rates of mammalian coding exons.

Chuang TJ, Chen FC, Chen YZ.

Proc Natl Acad Sci U S A. 2012 Sep 25;109(39):15841-6. Epub 2012 Sep 10.

PMID:
23019368
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Nucleosomes at active promoters: unforgettable loss.

Henikoff S.

Cancer Cell. 2007 Nov;12(5):407-9.

PMID:
17996642
[PubMed - indexed for MEDLINE]
Free Article
19.

DNA methylation regulated nucleosome dynamics.

Jimenez-Useche I, Ke J, Tian Y, Shim D, Howell SC, Qiu X, Yuan C.

Sci Rep. 2013;3:2121. doi: 10.1038/srep02121.

PMID:
23817195
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Aberrant de novo methylation of the p16INK4A CpG island is initiated post gene silencing in association with chromatin remodelling and mimics nucleosome positioning.

Hinshelwood RA, Melki JR, Huschtscha LI, Paul C, Song JZ, Stirzaker C, Reddel RR, Clark SJ.

Hum Mol Genet. 2009 Aug 15;18(16):3098-109. doi: 10.1093/hmg/ddp251. Epub 2009 May 28.

PMID:
19477956
[PubMed - indexed for MEDLINE]
Free Article

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