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Results: 1 to 20 of 155

1.

Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes.

Dong X, Fredman D, Lenhard B.

Genome Biol. 2009;10(8):R86. doi: 10.1186/gb-2009-10-8-r86. Epub 2009 Aug 21.

PMID:
19698106
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Ancora: a web resource for exploring highly conserved noncoding elements and their association with developmental regulatory genes.

Engström PG, Fredman D, Lenhard B.

Genome Biol. 2008;9(2):R34. doi: 10.1186/gb-2008-9-2-r34. Epub 2008 Feb 15.

PMID:
18279518
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Retroviral enhancer detection insertions in zebrafish combined with comparative genomics reveal genomic regulatory blocks - a fundamental feature of vertebrate genomes.

Kikuta H, Fredman D, Rinkwitz S, Lenhard B, Becker TS.

Genome Biol. 2007;8 Suppl 1:S4. Review.

PMID:
18047696
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates.

Kikuta H, Laplante M, Navratilova P, Komisarczuk AZ, Engström PG, Fredman D, Akalin A, Caccamo M, Sealy I, Howe K, Ghislain J, Pezeron G, Mourrain P, Ellingsen S, Oates AC, Thisse C, Thisse B, Foucher I, Adolf B, Geling A, Lenhard B, Becker TS.

Genome Res. 2007 May;17(5):545-55. Epub 2007 Mar 26.

PMID:
17387144
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Comparison of Pax1/9 locus reveals 500-Myr-old syntenic block and evolutionary conserved noncoding regions.

Wang W, Zhong J, Su B, Zhou Y, Wang YQ.

Mol Biol Evol. 2007 Mar;24(3):784-91. Epub 2006 Dec 20.

PMID:
17182894
[PubMed - indexed for MEDLINE]
Free Article
6.

Comparative genomics and evolution of conserved noncoding elements (CNE) in rainbow trout.

Moghadam HK, Ferguson MM, Danzmann RG.

BMC Genomics. 2009 Jun 23;10:278. doi: 10.1186/1471-2164-10-278.

PMID:
19549339
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Genomic regulatory blocks underlie extensive microsynteny conservation in insects.

Engström PG, Ho Sui SJ, Drivenes O, Becker TS, Lenhard B.

Genome Res. 2007 Dec;17(12):1898-908. Epub 2007 Nov 7.

PMID:
17989259
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes.

Ovcharenko I, Nobrega MA, Loots GG, Stubbs L.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W280-6.

PMID:
15215395
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

OrthoClusterDB: an online platform for synteny blocks.

Ng MP, Vergara IA, Frech C, Chen Q, Zeng X, Pei J, Chen N.

BMC Bioinformatics. 2009 Jun 23;10:192. doi: 10.1186/1471-2105-10-192.

PMID:
19549318
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The random versus fragile breakage models of chromosome evolution: a matter of resolution.

Becker TS, Lenhard B.

Mol Genet Genomics. 2007 Nov;278(5):487-91. Epub 2007 Sep 13. Review.

PMID:
17851692
[PubMed - indexed for MEDLINE]
11.

Genomic regulatory blocks in vertebrates and implications in human disease.

Navratilova P, Becker TS.

Brief Funct Genomic Proteomic. 2009 Jul;8(4):333-42. doi: 10.1093/bfgp/elp019. Epub 2009 Jun 26. Review.

PMID:
19561171
[PubMed - indexed for MEDLINE]
Free Article
12.

The evolutionary origin of nodal-related genes in teleosts.

Fan X, Dougan ST.

Dev Genes Evol. 2007 Dec;217(11-12):807-13. Epub 2007 Nov 9.

PMID:
17992538
[PubMed - indexed for MEDLINE]
13.

Comparative genomics of vertebrate Fox cluster loci.

Wotton KR, Shimeld SM.

BMC Genomics. 2006 Oct 24;7:271.

PMID:
17062144
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Elephant shark sequence reveals unique insights into the evolutionary history of vertebrate genes: A comparative analysis of the protocadherin cluster.

Yu WP, Rajasegaran V, Yew K, Loh WL, Tay BH, Amemiya CT, Brenner S, Venkatesh B.

Proc Natl Acad Sci U S A. 2008 Mar 11;105(10):3819-24. doi: 10.1073/pnas.0800398105. Epub 2008 Mar 4.

PMID:
18319338
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms.

Sinha AU, Meller J.

BMC Bioinformatics. 2007 Mar 8;8:82.

PMID:
17343765
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Phylogenetic conservation of chromosome numbers in Actinopterygiian fishes.

Mank JE, Avise JC.

Genetica. 2006 May;127(1-3):321-7.

PMID:
16850236
[PubMed - indexed for MEDLINE]
17.

Evolution of follistatin in teleosts revealed through phylogenetic, genomic and expression analyses.

Macqueen DJ, Johnston IA.

Dev Genes Evol. 2008 Jan;218(1):1-14. Epub 2007 Dec 11.

PMID:
18074148
[PubMed - indexed for MEDLINE]
18.

Visualizing syntenic relationships among the hemiascomycetes with the Yeast Gene Order Browser.

Byrne KP, Wolfe KH.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D452-5.

PMID:
16381909
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Rapidly evolving fish genomes and teleost diversity.

Ravi V, Venkatesh B.

Curr Opin Genet Dev. 2008 Dec;18(6):544-50. doi: 10.1016/j.gde.2008.11.001. Epub 2008 Dec 16. Review.

PMID:
19095434
[PubMed - indexed for MEDLINE]
20.

Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes.

Cannon SB, Sterck L, Rombauts S, Sato S, Cheung F, Gouzy J, Wang X, Mudge J, Vasdewani J, Schiex T, Spannagl M, Monaghan E, Nicholson C, Humphray SJ, Schoof H, Mayer KF, Rogers J, Quétier F, Oldroyd GE, Debellé F, Cook DR, Retzel EF, Roe BA, Town CD, Tabata S, Van de Peer Y, Young ND.

Proc Natl Acad Sci U S A. 2006 Oct 3;103(40):14959-64. Epub 2006 Sep 26. Erratum in: Proc Natl Acad Sci U S A. 2006 Nov 21;103(47):18026. Scheix, Thomas [corrected to Schiex, Thomas].

PMID:
17003129
[PubMed - indexed for MEDLINE]
Free PMC Article

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