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Results: 1 to 20 of 348

1.

Whole genome sequencing of a single Bos taurus animal for single nucleotide polymorphism discovery.

Eck SH, Benet-Pagès A, Flisikowski K, Meitinger T, Fries R, Strom TM.

Genome Biol. 2009;10(8):R82. doi: 10.1186/gb-2009-10-8-r82. Epub 2009 Aug 6.

PMID:
19660108
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey.

Kerstens HH, Crooijmans RP, Veenendaal A, Dibbits BW, Chin-A-Woeng TF, den Dunnen JT, Groenen MA.

BMC Genomics. 2009 Oct 16;10:479. doi: 10.1186/1471-2164-10-479.

PMID:
19835600
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery.

Stothard P, Choi JW, Basu U, Sumner-Thomson JM, Meng Y, Liao X, Moore SS.

BMC Genomics. 2011 Nov 15;12:559. doi: 10.1186/1471-2164-12-559.

PMID:
22085807
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Discovery, characterization and validation of single nucleotide polymorphisms within 206 bovine genes that may be considered as candidate genes for beef production and quality.

Williams JL, Dunner S, Valentini A, Mazza R, Amarger V, Checa ML, Crisà A, Razzaq N, Delourme D, Grandjean F, Marchitelli C, García D, Gomez RP, Negrini R, Marsan PA, Levéziel H.

Anim Genet. 2009 Aug;40(4):486-91. doi: 10.1111/j.1365-2052.2009.01874.x. Epub 2009 Apr 16.

PMID:
19397516
[PubMed - indexed for MEDLINE]
5.

SNP discovery in swine by reduced representation and high throughput pyrosequencing.

Wiedmann RT, Smith TP, Nonneman DJ.

BMC Genet. 2008 Dec 4;9:81. doi: 10.1186/1471-2156-9-81.

PMID:
19055830
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Discovery, validation and characterization of 1039 cattle single nucleotide polymorphisms.

Donthu R, Larkin DM, Heaton MP, Lewin HA.

Anim Genet. 2010 Aug;41(4):421-3. doi: 10.1111/j.1365-2052.2009.02008.x. Epub 2009 Nov 26.

PMID:
19958345
[PubMed - indexed for MEDLINE]
7.

Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays.

Bischoff SR, Tsai S, Hardison NE, York AM, Freking BA, Nonneman D, Rohrer G, Piedrahita JA.

BMC Genomics. 2008 May 29;9:252. doi: 10.1186/1471-2164-9-252.

PMID:
18510738
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Genome-wide discovery of DNA polymorphism in Brassica rapa.

Park S, Yu HJ, Mun JH, Lee SC.

Mol Genet Genomics. 2010 Feb;283(2):135-45. doi: 10.1007/s00438-009-0504-0. Epub 2009 Dec 19.

PMID:
20024583
[PubMed - indexed for MEDLINE]
9.

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries.

Van Tassell CP, Smith TP, Matukumalli LK, Taylor JF, Schnabel RD, Lawley CT, Haudenschild CD, Moore SS, Warren WC, Sonstegard TS.

Nat Methods. 2008 Mar;5(3):247-52. doi: 10.1038/nmeth.1185. Epub 2008 Feb 24.

PMID:
18297082
[PubMed - indexed for MEDLINE]
10.

Transcriptome analysis and SNP identification in SCC of horn in (Bos indicus) Indian cattle.

Koringa PG, Jakhesara SJ, Bhatt VD, Patel AB, Dash D, Joshi CG.

Gene. 2013 Nov 1;530(1):119-26. doi: 10.1016/j.gene.2013.07.061. Epub 2013 Aug 24.

PMID:
23978612
[PubMed - indexed for MEDLINE]
11.

Establishment of a pipeline to analyse non-synonymous SNPs in Bos taurus.

Lee MA, Keane OM, Glass BC, Manley TR, Cullen NG, Dodds KG, McCulloch AF, Morris CA, Schreiber M, Warren J, Zadissa A, Wilson T, McEwan JC.

BMC Genomics. 2006 Nov 26;7:298.

PMID:
17125523
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Massively parallel sequencing of Chikso (Korean brindle cattle) to discover genome-wide SNPs and InDels.

Choi JW, Liao X, Park S, Jeon HJ, Chung WH, Stothard P, Park YS, Lee JK, Lee KT, Kim SH, Oh JD, Kim N, Kim TH, Lee HK, Lee SJ.

Mol Cells. 2013 Sep;36(3):203-11. doi: 10.1007/s10059-013-2347-0. Epub 2013 Aug 1.

PMID:
23912596
[PubMed - indexed for MEDLINE]
Free Article
13.

Genome-wide DNA polymorphisms in elite indica rice inbreds discovered by whole-genome sequencing.

Subbaiyan GK, Waters DL, Katiyar SK, Sadananda AR, Vaddadi S, Henry RJ.

Plant Biotechnol J. 2012 Aug;10(6):623-34. doi: 10.1111/j.1467-7652.2011.00676.x. Epub 2012 Jan 6.

PMID:
22222031
[PubMed - indexed for MEDLINE]
14.

An assessment of population structure in eight breeds of cattle using a whole genome SNP panel.

McKay SD, Schnabel RD, Murdoch BM, Matukumalli LK, Aerts J, Coppieters W, Crews D, Dias Neto E, Gill CA, Gao C, Mannen H, Wang Z, Van Tassell CP, Williams JL, Taylor JF, Moore SS.

BMC Genet. 2008 May 20;9:37. doi: 10.1186/1471-2156-9-37.

PMID:
18492244
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Mining for single nucleotide polymorphisms in pig genome sequence data.

Kerstens HH, Kollers S, Kommadath A, Del Rosario M, Dibbits B, Kinders SM, Crooijmans RP, Groenen MA.

BMC Genomics. 2009 Jan 6;10:4. doi: 10.1186/1471-2164-10-4.

PMID:
19126189
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Hot topic: performance of bovine high-density genotyping platforms in Holsteins and Jerseys.

Rincon G, Weber KL, Eenennaam AL, Golden BL, Medrano JF.

J Dairy Sci. 2011 Dec;94(12):6116-21. doi: 10.3168/jds.2011-4764.

PMID:
22118099
[PubMed - indexed for MEDLINE]
17.

Sequencing and annotated analysis of the Holstein cow genome.

Kõks S, Lilleoja R, Reimann E, Salumets A, Reemann P, Jaakma Ü.

Mamm Genome. 2013 Aug;24(7-8):309-21. doi: 10.1007/s00335-013-9464-0. Epub 2013 Jul 27.

PMID:
23893136
[PubMed - indexed for MEDLINE]
18.

Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms.

You FM, Deal KR, Wang J, Britton MT, Fass JN, Lin D, Dandekar AM, Leslie CA, Aradhya M, Luo MC, Dvorak J.

BMC Genomics. 2012 Jul 31;13:354. doi: 10.1186/1471-2164-13-354.

PMID:
22849334
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Promoter region of the bovine growth hormone receptor gene: single nucleotide polymorphism discovery in cattle and association with performance in Brangus bulls.

Garrett AJ, Rincon G, Medrano JF, Elzo MA, Silver GA, Thomas MG.

J Anim Sci. 2008 Dec;86(12):3315-23. doi: 10.2527/jas.2008-0990. Epub 2008 Aug 1.

PMID:
18676722
[PubMed - indexed for MEDLINE]
Free Article
20.

Extent of genome-wide linkage disequilibrium in Australian Holstein-Friesian cattle based on a high-density SNP panel.

Khatkar MS, Nicholas FW, Collins AR, Zenger KR, Cavanagh JA, Barris W, Schnabel RD, Taylor JF, Raadsma HW.

BMC Genomics. 2008 Apr 24;9:187. doi: 10.1186/1471-2164-9-187.

PMID:
18435834
[PubMed - indexed for MEDLINE]
Free PMC Article

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