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Results: 1 to 20 of 214

1.

Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome.

Rach EA, Yuan HY, Majoros WH, Tomancak P, Ohler U.

Genome Biol. 2009;10(7):R73. doi: 10.1186/gb-2009-10-7-r73. Epub 2009 Jul 9.

PMID:
19589141
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Identification of core promoter modules in Drosophila and their application in accurate transcription start site prediction.

Ohler U.

Nucleic Acids Res. 2006;34(20):5943-50. Epub 2006 Oct 26.

PMID:
17068082
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli.

Mendoza-Vargas A, Olvera L, Olvera M, Grande R, Vega-Alvarado L, Taboada B, Jimenez-Jacinto V, Salgado H, Juárez K, Contreras-Moreira B, Huerta AM, Collado-Vides J, Morett E.

PLoS One. 2009 Oct 19;4(10):e7526. doi: 10.1371/journal.pone.0007526.

PMID:
19838305
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Computational analysis of core promoters in the Drosophila genome.

Ohler U, Liao GC, Niemann H, Rubin GM.

Genome Biol. 2002;3(12):RESEARCH0087. Epub 2002 Dec 20.

PMID:
12537576
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Heterogeneity of Arabidopsis core promoters revealed by high-density TSS analysis.

Yamamoto YY, Yoshitsugu T, Sakurai T, Seki M, Shinozaki K, Obokata J.

Plant J. 2009 Oct;60(2):350-62. doi: 10.1111/j.1365-313X.2009.03958.x. Epub 2009 Jun 29.

PMID:
19563441
[PubMed - indexed for MEDLINE]
6.

Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura.

Berman BP, Pfeiffer BD, Laverty TR, Salzberg SL, Rubin GM, Eisen MB, Celniker SE.

Genome Biol. 2004;5(9):R61. Epub 2004 Aug 20.

PMID:
15345045
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Highly diversified molecular evolution of downstream transcription start sites in rice and Arabidopsis.

Tanaka T, Koyanagi KO, Itoh T.

Plant Physiol. 2009 Mar;149(3):1316-24. doi: 10.1104/pp.108.131656. Epub 2008 Dec 31.

PMID:
19118127
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

V1R promoters are well conserved and exhibit common putative regulatory motifs.

Stewart R, Lane RP.

BMC Genomics. 2007 Jul 25;8:253.

PMID:
17651493
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Complex organizational structure of the genome revealed by genome-wide analysis of single and alternative promoters in Drosophila melanogaster.

Zhu Q, Halfon MS.

BMC Genomics. 2009 Jan 7;10:9. doi: 10.1186/1471-2164-10-9.

PMID:
19128496
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A comparative analysis of divergently-paired genes (DPGs) among Drosophila and vertebrate genomes.

Yang L, Yu J.

BMC Evol Biol. 2009 Mar 11;9:55. doi: 10.1186/1471-2148-9-55.

PMID:
19284596
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genome-wide analysis of promoter architecture in Drosophila melanogaster.

Hoskins RA, Landolin JM, Brown JB, Sandler JE, Takahashi H, Lassmann T, Yu C, Booth BW, Zhang D, Wan KH, Yang L, Boley N, Andrews J, Kaufman TC, Graveley BR, Bickel PJ, Carninci P, Carlson JW, Celniker SE.

Genome Res. 2011 Feb;21(2):182-92. doi: 10.1101/gr.112466.110. Epub 2010 Dec 22.

PMID:
21177961
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Transcriptional features of genomic regulatory blocks.

Akalin A, Fredman D, Arner E, Dong X, Bryne JC, Suzuki H, Daub CO, Hayashizaki Y, Lenhard B.

Genome Biol. 2009;10(4):R38. doi: 10.1186/gb-2009-10-4-r38. Epub 2009 Apr 19.

PMID:
19374772
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Global identification of transcription start sites in the genome of Apis mellifera using 5'LongSAGE.

Zheng H, Sun L, Peng W, Shen Y, Wang Y, Xu B, Gu W, Chen S, Huang Z, Wang S.

J Exp Zool B Mol Dev Evol. 2011 Nov 15;316(7):500-14. doi: 10.1002/jez.b.21421. Epub 2011 Jun 21.

PMID:
21695780
[PubMed - indexed for MEDLINE]
14.

Identification of multiple transcription initiation, polyadenylation, and splice sites in the Drosophila melanogaster TART family of telomeric retrotransposons.

Maxwell PH, Belote JM, Levis RW.

Nucleic Acids Res. 2006;34(19):5498-507. Epub 2006 Oct 4.

PMID:
17020919
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Identification of estrogen-responsive genes using a genome-wide analysis of promoter elements for transcription factor binding sites.

Kamalakaran S, Radhakrishnan SK, Beck WT.

J Biol Chem. 2005 Jun 3;280(22):21491-7. Epub 2005 Mar 24.

PMID:
15790569
[PubMed - indexed for MEDLINE]
Free Article
16.

Biological function of unannotated transcription during the early development of Drosophila melanogaster.

Manak JR, Dike S, Sementchenko V, Kapranov P, Biemar F, Long J, Cheng J, Bell I, Ghosh S, Piccolboni A, Gingeras TR.

Nat Genet. 2006 Oct;38(10):1151-8. Epub 2006 Sep 3.

PMID:
16951679
[PubMed - indexed for MEDLINE]
17.

Hormonal regulation of the E75 gene in Drosophila: identifying functional regulatory elements through computational and biological analysis.

Bernardo TJ, Dubrovskaya VA, Jannat H, Maughan B, Dubrovsky EB.

J Mol Biol. 2009 Apr 10;387(4):794-808.

PMID:
19340940
[PubMed - indexed for MEDLINE]
18.

Characterization of transcription from TATA-less promoters: identification of a new core promoter element XCPE2 and analysis of factor requirements.

Anish R, Hossain MB, Jacobson RH, Takada S.

PLoS One. 2009;4(4):e5103. doi: 10.1371/journal.pone.0005103. Epub 2009 Apr 1.

PMID:
19337366
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Functional dissection of two promoters that control sense and antisense transcription of Drosophila melanogaster F elements.

Contursi C, Minchiotti G, Di Nocera PP.

J Mol Biol. 1993 Dec 20;234(4):988-97.

PMID:
8263945
[PubMed - indexed for MEDLINE]
20.

Genomic organization, nucleotide sequence analysis of the core histone genes cluster in Chlamys farreri and molecular evolution assessment of the H2A and H2B.

Li C, Song L, Zhao J, Zou H, Su J, Zhang H.

DNA Seq. 2006 Dec;17(6):440-51.

PMID:
17381045
[PubMed - indexed for MEDLINE]

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