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Results: 1 to 20 of 105

1.

Tandem and cryptic amino acid repeats accumulate in disordered regions of proteins.

Simon M, Hancock JM.

Genome Biol. 2009;10(6):R59. doi: 10.1186/gb-2009-10-6-r59. Epub 2009 Jun 1.

PMID:
19486509
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Comprehensive analysis of tandem amino acid repeats from ten angiosperm genomes.

Zhou Y, Liu J, Han L, Li ZG, Zhang Z.

BMC Genomics. 2011 Dec 23;12:632. doi: 10.1186/1471-2164-12-632.

PMID:
22195734
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Highly constrained proteins contain an unexpectedly large number of amino acid tandem repeats.

Mularoni L, Veitia RA, Albà MM.

Genomics. 2007 Mar;89(3):316-25. Epub 2006 Dec 28.

PMID:
17196365
[PubMed - indexed for MEDLINE]
Free Article
4.

Elevated evolutionary rate in genes with homopolymeric amino acid repeats constituting nondisordered structure.

Gojobori J, Ueda S.

Mol Biol Evol. 2011 Jan;28(1):543-50. doi: 10.1093/molbev/msq225. Epub 2010 Aug 26.

PMID:
20798138
[PubMed - indexed for MEDLINE]
Free Article
5.

ST proteins, a new family of plant tandem repeat proteins with a DUF2775 domain mainly found in Fabaceae and Asteraceae.

Albornos L, Martín I, Iglesias R, Jiménez T, Labrador E, Dopico B.

BMC Plant Biol. 2012 Nov 7;12:207. doi: 10.1186/1471-2229-12-207.

PMID:
23134664
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Natural selection drives the accumulation of amino acid tandem repeats in human proteins.

Mularoni L, Ledda A, Toll-Riera M, Albà MM.

Genome Res. 2010 Jun;20(6):745-54. doi: 10.1101/gr.101261.109. Epub 2010 Mar 24.

PMID:
20335526
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Simple sequence repeats in proteins and their significance for network evolution.

Hancock JM, Simon M.

Gene. 2005 Jan 17;345(1):113-8. Epub 2004 Dec 15. Review.

PMID:
15716087
[PubMed - indexed for MEDLINE]
8.

Amino acid repeats and the structure and evolution of proteins.

Albà MM, Tompa P, Veitia RA.

Genome Dyn. 2007;3:119-30. doi: 10.1159/000107607. Review.

PMID:
18753788
[PubMed - indexed for MEDLINE]
9.

Identification and characterization of tandem repeats in exon III of dopamine receptor D4 (DRD4) genes from different mammalian species.

Larsen SA, Mogensen L, Dietz R, Baagøe HJ, Andersen M, Werge T, Rasmussen HB.

DNA Cell Biol. 2005 Dec;24(12):795-804.

PMID:
16332176
[PubMed - indexed for MEDLINE]
10.

The origin of conserved protein domains and amino acid repeats via adaptive competition for control over amino acid residues.

Rorick MM, Wagner GP.

J Mol Evol. 2010 Jan;70(1):29-43. doi: 10.1007/s00239-009-9305-7. Epub 2009 Dec 19.

PMID:
20024539
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Markov models of amino acid substitution to study proteins with intrinsically disordered regions.

Szalkowski AM, Anisimova M.

PLoS One. 2011;6(5):e20488. doi: 10.1371/journal.pone.0020488. Epub 2011 May 27.

PMID:
21647374
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Evolution of N-terminal sequences of the vertebrate HOXA13 protein.

Mortlock DP, Sateesh P, Innis JW.

Mamm Genome. 2000 Feb;11(2):151-8.

PMID:
10656931
[PubMed - indexed for MEDLINE]
13.

Amino acid reiterations in yeast are overrepresented in particular classes of proteins and show evidence of a slippage-like mutational process.

Mar Albà M, Santibáñez-Koref MF, Hancock JM.

J Mol Evol. 1999 Dec;49(6):789-97.

PMID:
10594180
[PubMed - indexed for MEDLINE]
14.

Large cryptic internal sequence repeats in protein structures from Homo sapiens.

Sarani R, Udayaprakash NA, Subashini R, Mridula P, Yamane T, Sekar K.

J Biosci. 2009 Mar;34(1):103-12.

PMID:
19430122
[PubMed - indexed for MEDLINE]
Free Article
15.

Molecular evolution of amelogenin in mammals.

Delgado S, Girondot M, Sire JY.

J Mol Evol. 2005 Jan;60(1):12-30.

PMID:
15696365
[PubMed - indexed for MEDLINE]
16.

ProtRepeatsDB: a database of amino acid repeats in genomes.

Kalita MK, Ramasamy G, Duraisamy S, Chauhan VS, Gupta D.

BMC Bioinformatics. 2006 Jul 7;7:336.

PMID:
16827924
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Chemical composition is maintained in poorly conserved intrinsically disordered regions and suggests a means for their classification.

Moesa HA, Wakabayashi S, Nakai K, Patil A.

Mol Biosyst. 2012 Oct 30;8(12):3262-73. doi: 10.1039/c2mb25202c.

PMID:
23076520
[PubMed - indexed for MEDLINE]
18.

Comparative analysis of amino acid repeats in rodents and humans.

Albà MM, Guigó R.

Genome Res. 2004 Apr;14(4):549-54.

PMID:
15059995
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Conservation of intrinsic disorder in protein domains and families: II. functions of conserved disorder.

Chen JW, Romero P, Uversky VN, Dunker AK.

J Proteome Res. 2006 Apr;5(4):888-98.

PMID:
16602696
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Mutation patterns of amino acid tandem repeats in the human proteome.

Mularoni L, Guigó R, Albà MM.

Genome Biol. 2006;7(4):R33. Epub 2006 Apr 26.

PMID:
16640792
[PubMed - indexed for MEDLINE]
Free PMC Article

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