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Results: 1 to 20 of 69

1.

Ribosomal footprints on a transcriptome landscape.

Morris DR.

Genome Biol. 2009;10(4):215. doi: 10.1186/gb-2009-10-4-215. Epub 2009 Apr 28. Review.

PMID:
19439030
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach.

Bainbridge MN, Warren RL, Hirst M, Romanuik T, Zeng T, Go A, Delaney A, Griffith M, Hickenbotham M, Magrini V, Mardis ER, Sadar MD, Siddiqui AS, Marra MA, Jones SJ.

BMC Genomics. 2006 Sep 29;7:246.

PMID:
17010196
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Massively parallel signature sequencing (MPSS) as a tool for in-depth quantitative gene expression profiling in all organisms.

Reinartz J, Bruyns E, Lin JZ, Burcham T, Brenner S, Bowen B, Kramer M, Woychik R.

Brief Funct Genomic Proteomic. 2002 Feb;1(1):95-104. Review.

PMID:
15251069
[PubMed - indexed for MEDLINE]
Free Article
4.

Exploring translation regulation by global analysis of ribosomal association.

Melamed D, Eliyahu E, Arava Y.

Methods. 2009 Jul;48(3):301-5. doi: 10.1016/j.ymeth.2009.04.020. Epub 2009 May 6.

PMID:
19426805
[PubMed - indexed for MEDLINE]
5.

Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing.

Morin R, Bainbridge M, Fejes A, Hirst M, Krzywinski M, Pugh T, McDonald H, Varhol R, Jones S, Marra M.

Biotechniques. 2008 Jul;45(1):81-94. doi: 10.2144/000112900.

PMID:
18611170
[PubMed - indexed for MEDLINE]
Free Article
6.

RNA-Seq: a method for comprehensive transcriptome analysis.

Nagalakshmi U, Waern K, Snyder M.

Curr Protoc Mol Biol. 2010 Jan;Chapter 4:Unit 4.11.1-13. doi: 10.1002/0471142727.mb0411s89.

PMID:
20069539
[PubMed - indexed for MEDLINE]
7.

Accessing the transcriptome: how to normalize mRNA pools.

Vogel H, Wheat CW.

Methods Mol Biol. 2011;772:105-28. doi: 10.1007/978-1-61779-228-1_6.

PMID:
22065434
[PubMed - indexed for MEDLINE]
8.

Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts.

Levin JZ, Berger MF, Adiconis X, Rogov P, Melnikov A, Fennell T, Nusbaum C, Garraway LA, Gnirke A.

Genome Biol. 2009;10(10):R115. doi: 10.1186/gb-2009-10-10-r115. Epub 2009 Oct 16.

PMID:
19835606
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

[Transcriptome analyses using massively paralleled sequencers].

Suzuki Y, Tsuchihara K.

Tanpakushitsu Kakusan Koso. 2009 Aug;54(10):1256-63. Review. Japanese. No abstract available.

PMID:
19663252
[PubMed - indexed for MEDLINE]
10.

Generation of longer 3' cDNA fragments from massively parallel signature sequencing tags.

Silva AP, Chen J, Carraro DM, Wang SM, Camargo AA.

Nucleic Acids Res. 2004 Jul 6;32(12):e94.

PMID:
15247327
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Benchmarking next-generation transcriptome sequencing for functional and evolutionary genomics.

Gibbons JG, Janson EM, Hittinger CT, Johnston M, Abbot P, Rokas A.

Mol Biol Evol. 2009 Dec;26(12):2731-44. doi: 10.1093/molbev/msp188. Epub 2009 Aug 25.

PMID:
19706727
[PubMed - indexed for MEDLINE]
Free Article
12.

Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution.

Lee S, Liu B, Lee S, Huang SX, Shen B, Qian SB.

Proc Natl Acad Sci U S A. 2012 Sep 11;109(37):E2424-32. doi: 10.1073/pnas.1207846109. Epub 2012 Aug 27.

PMID:
22927429
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Digital gene expression by tag sequencing on the illumina genome analyzer.

Morrissy S, Zhao Y, Delaney A, Asano J, Dhalla N, Li I, McDonald H, Pandoh P, Prabhu AL, Tam A, Hirst M, Marra M.

Curr Protoc Hum Genet. 2010 Apr;Chapter 11:Unit 11.11.1-36. doi: 10.1002/0471142905.hg1111s65.

PMID:
20373513
[PubMed - indexed for MEDLINE]
14.

Technical advances: genome-wide cDNA-AFLP analysis of the Arabidopsis transcriptome.

Volkmuth W, Turk S, Shapiro A, Fang Y, Kiegle E, van Haaren M, Donson J.

OMICS. 2003 Summer;7(2):143-59.

PMID:
14506844
[PubMed - indexed for MEDLINE]
15.

A combination of LongSAGE with Solexa sequencing is well suited to explore the depth and the complexity of transcriptome.

Hanriot L, Keime C, Gay N, Faure C, Dossat C, Wincker P, Scoté-Blachon C, Peyron C, Gandrillon O.

BMC Genomics. 2008 Sep 16;9:418. doi: 10.1186/1471-2164-9-418.

PMID:
18796152
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Quantification of the yeast transcriptome by single-molecule sequencing.

Lipson D, Raz T, Kieu A, Jones DR, Giladi E, Thayer E, Thompson JF, Letovsky S, Milos P, Causey M.

Nat Biotechnol. 2009 Jul;27(7):652-8. doi: 10.1038/nbt.1551. Epub 2009 Jul 5.

PMID:
19581875
[PubMed - indexed for MEDLINE]
17.

A sensitive transcriptome analysis method that can detect unknown transcripts.

Fukumura R, Takahashi H, Saito T, Tsutsumi Y, Fujimori A, Sato S, Tatsumi K, Araki R, Abe M.

Nucleic Acids Res. 2003 Aug 15;31(16):e94.

PMID:
12907746
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Gene expression profiling by massively parallel sequencing.

Torres TT, Metta M, Ottenwälder B, Schlötterer C.

Genome Res. 2008 Jan;18(1):172-7. Epub 2007 Nov 21.

PMID:
18032722
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Analyzing gene expression data from microarray and next-generation dna sequencing transcriptome profiling assays using GeneSifter analysis edition.

Porter S, Olson NE, Smith T.

Curr Protoc Bioinformatics. 2009 Sep;Chapter 7:Unit 7.14 7.14.1-35. doi: 10.1002/0471250953.bi0714s27.

PMID:
19728290
[PubMed - indexed for MEDLINE]
20.

[Transcriptomes for serial analysis of gene expression].

Marti J, Piquemal D, Manchon L, Commes T.

J Soc Biol. 2002;196(4):303-7. Review. French.

PMID:
12645300
[PubMed - indexed for MEDLINE]

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