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Results: 1 to 20 of 512

1.

Transcriptional features of genomic regulatory blocks.

Akalin A, Fredman D, Arner E, Dong X, Bryne JC, Suzuki H, Daub CO, Hayashizaki Y, Lenhard B.

Genome Biol. 2009;10(4):R38. doi: 10.1186/gb-2009-10-4-r38. Epub 2009 Apr 19.

PMID:
19374772
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Genomic features and computational identification of human microRNAs under long-range developmental regulation.

Sheng Y, Previti C.

BMC Genomics. 2011 May 27;12:270. doi: 10.1186/1471-2164-12-270.

PMID:
21619633
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome.

Rach EA, Yuan HY, Majoros WH, Tomancak P, Ohler U.

Genome Biol. 2009;10(7):R73. doi: 10.1186/gb-2009-10-7-r73. Epub 2009 Jul 9.

PMID:
19589141
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Genomic regulatory blocks underlie extensive microsynteny conservation in insects.

Engström PG, Ho Sui SJ, Drivenes O, Becker TS, Lenhard B.

Genome Res. 2007 Dec;17(12):1898-908. Epub 2007 Nov 7.

PMID:
17989259
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Genome-wide investigation of in vivo EGR-1 binding sites in monocytic differentiation.

Kubosaki A, Tomaru Y, Tagami M, Arner E, Miura H, Suzuki T, Suzuki M, Suzuki H, Hayashizaki Y.

Genome Biol. 2009;10(4):R41. doi: 10.1186/gb-2009-10-4-r41. Epub 2009 Apr 19.

PMID:
19374776
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Definition, conservation and epigenetics of housekeeping and tissue-enriched genes.

She X, Rohl CA, Castle JC, Kulkarni AV, Johnson JM, Chen R.

BMC Genomics. 2009 Jun 17;10:269. doi: 10.1186/1471-2164-10-269.

PMID:
19534766
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Computational discovery of transcriptional regulatory rules.

Pham TH, Clemente JC, Satou K, Ho TB.

Bioinformatics. 2005 Sep 1;21 Suppl 2:ii101-7.

PMID:
16204087
[PubMed - indexed for MEDLINE]
Free Article
8.

Clusters of regulatory signals for RNA polymerase II transcription associated with Alu family repeats and CpG islands in human promoters.

Oei SL, Babich VS, Kazakov VI, Usmanova NM, Kropotov AV, Tomilin NV.

Genomics. 2004 May;83(5):873-82.

PMID:
15081116
[PubMed - indexed for MEDLINE]
9.

V1R promoters are well conserved and exhibit common putative regulatory motifs.

Stewart R, Lane RP.

BMC Genomics. 2007 Jul 25;8:253.

PMID:
17651493
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Composition-sensitive analysis of the human genome for regulatory signals.

Kel-Margoulis OV, Tchekmenev D, Kel AE, Goessling E, Hornischer K, Lewicki-Potapov B, Wingender E.

In Silico Biol. 2003;3(1-2):145-71. Epub 2003 Jun 27.

PMID:
12954097
[PubMed - indexed for MEDLINE]
11.

A distinct epigenetic signature at targets of a leukemia protein.

Rossetti S, Hoogeveen AT, Liang P, Stanciu C, van der Spek P, Sacchi N.

BMC Genomics. 2007 Feb 1;8:38.

PMID:
17266773
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Alternative usages of multiple promoters of the acetyl-CoA carboxylase beta gene are related to differential transcriptional regulation in human and rodent tissues.

Oh SY, Lee MY, Kim JM, Yoon S, Shin S, Park YN, Ahn YH, Kim KS.

J Biol Chem. 2005 Feb 18;280(7):5909-16. Epub 2004 Dec 6.

PMID:
15590647
[PubMed - indexed for MEDLINE]
Free Article
13.

Intergenic, gene terminal, and intragenic CpG islands in the human genome.

Medvedeva YA, Fridman MV, Oparina NJ, Malko DB, Ermakova EO, Kulakovskiy IV, Heinzel A, Makeev VJ.

BMC Genomics. 2010 Jan 19;11:48. doi: 10.1186/1471-2164-11-48.

PMID:
20085634
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Genome-wide analysis of factors regulating gene expression in liver.

Teufel A, Weinmann A, Krupp M, Budinger M, Galle PR.

Gene. 2007 Mar 15;389(2):114-21. Epub 2006 Nov 7.

PMID:
17174484
[PubMed - indexed for MEDLINE]
15.

Exploring the characteristics of sequence elements in proximal promoters of human genes.

Bina M, Wyss P, Ren W, Szpankowski W, Thomas E, Randhawa R, Reddy S, John PM, Pares-Matos EI, Stein A, Xu H, Lazarus SA.

Genomics. 2004 Dec;84(6):929-40.

PMID:
15533710
[PubMed - indexed for MEDLINE]
16.

Core histone genes of Giardia intestinalis: genomic organization, promoter structure, and expression.

Yee J, Tang A, Lau WL, Ritter H, Delport D, Page M, Adam RD, Müller M, Wu G.

BMC Mol Biol. 2007 Apr 10;8:26.

PMID:
17425802
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates.

Kikuta H, Laplante M, Navratilova P, Komisarczuk AZ, Engström PG, Fredman D, Akalin A, Caccamo M, Sealy I, Howe K, Ghislain J, Pezeron G, Mourrain P, Ellingsen S, Oates AC, Thisse C, Thisse B, Foucher I, Adolf B, Geling A, Lenhard B, Becker TS.

Genome Res. 2007 May;17(5):545-55. Epub 2007 Mar 26.

PMID:
17387144
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genome-wide analysis reveals strong correlation between CpG islands with nearby transcription start sites of genes and their tissue specificity.

Yamashita R, Suzuki Y, Sugano S, Nakai K.

Gene. 2005 May 9;350(2):129-36. Epub 2005 Mar 19.

PMID:
15784181
[PubMed - indexed for MEDLINE]
19.

Identifying promoter features of co-regulated genes with similar network motifs.

Harari O, del Val C, Romero-Zaliz R, Shin D, Huang H, Groisman EA, Zwir I.

BMC Bioinformatics. 2009 Apr 29;10 Suppl 4:S1. doi: 10.1186/1471-2105-10-S4-S1.

PMID:
19426448
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Systematic analysis of alternative promoters correlated with alternative splicing in human genes.

Ma X, Li-Ling J, Huang Q, Chen X, Hou L, Ma F.

Genomics. 2009 May;93(5):420-5. doi: 10.1016/j.ygeno.2009.01.008. Epub 2009 Feb 11.

PMID:
19442634
[PubMed - indexed for MEDLINE]
Free Article

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