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Results: 1 to 20 of 856

1.

Evolutionary rates and centrality in the yeast gene regulatory network.

Jovelin R, Phillips PC.

Genome Biol. 2009;10(4):R35. doi: 10.1186/gb-2009-10-4-r35. Epub 2009 Apr 9.

PMID:
19358738
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Transcriptional regulatory networks in Saccharomyces cerevisiae.

Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA.

Science. 2002 Oct 25;298(5594):799-804.

PMID:
12399584
[PubMed - indexed for MEDLINE]
Free Article
3.

Topological basis of signal integration in the transcriptional-regulatory network of the yeast, Saccharomyces cerevisiae.

Farkas IJ, Wu C, Chennubhotla C, Bahar I, Oltvai ZN.

BMC Bioinformatics. 2006 Oct 28;7:478.

PMID:
17069658
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Localized network centrality and essentiality in the yeast-protein interaction network.

Park K, Kim D.

Proteomics. 2009 Nov;9(22):5143-54. doi: 10.1002/pmic.200900357.

PMID:
19771559
[PubMed - indexed for MEDLINE]
5.

Computational discovery of gene modules and regulatory networks.

Bar-Joseph Z, Gerber GK, Lee TI, Rinaldi NJ, Yoo JY, Robert F, Gordon DB, Fraenkel E, Jaakkola TS, Young RA, Gifford DK.

Nat Biotechnol. 2003 Nov;21(11):1337-42. Epub 2003 Oct 12.

PMID:
14555958
[PubMed - indexed for MEDLINE]
Free Article
6.

Divergence of transcription factor binding sites across related yeast species.

Borneman AR, Gianoulis TA, Zhang ZD, Yu H, Rozowsky J, Seringhaus MR, Wang LY, Gerstein M, Snyder M.

Science. 2007 Aug 10;317(5839):815-9.

PMID:
17690298
[PubMed - indexed for MEDLINE]
Free Article
7.
8.

Influence of metabolic network structure and function on enzyme evolution.

Vitkup D, Kharchenko P, Wagner A.

Genome Biol. 2006;7(5):R39. Epub 2006 May 9.

PMID:
16684370
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genome adaptation to chemical stress: clues from comparative transcriptomics in Saccharomyces cerevisiae and Candida glabrata.

Lelandais G, Tanty V, Geneix C, Etchebest C, Jacq C, Devaux F.

Genome Biol. 2008;9(11):R164. doi: 10.1186/gb-2008-9-11-r164. Epub 2008 Nov 24.

PMID:
19025642
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Computational architecture of the yeast regulatory network.

Maslov S, Sneppen K.

Phys Biol. 2005 Nov 9;2(4):S94-100.

PMID:
16280626
[PubMed - indexed for MEDLINE]
11.

Functional and evolutionary inference in gene networks: does topology matter?

Siegal ML, Promislow DE, Bergman A.

Genetica. 2007 Jan;129(1):83-103. Epub 2006 Aug 8.

PMID:
16897451
[PubMed - indexed for MEDLINE]
12.

A regulatory network analysis of phenotypic plasticity in yeast.

Promislow D.

Am Nat. 2005 May;165(5):515-23. Epub 2005 Feb 18.

PMID:
15795849
[PubMed - indexed for MEDLINE]
13.

Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p.

Moxley JF, Jewett MC, Antoniewicz MR, Villas-Boas SG, Alper H, Wheeler RT, Tong L, Hinnebusch AG, Ideker T, Nielsen J, Stephanopoulos G.

Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6477-82. doi: 10.1073/pnas.0811091106. Epub 2009 Apr 3.

PMID:
19346491
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

A single determinant dominates the rate of yeast protein evolution.

Drummond DA, Raval A, Wilke CO.

Mol Biol Evol. 2006 Feb;23(2):327-37. Epub 2005 Oct 19.

PMID:
16237209
[PubMed - indexed for MEDLINE]
Free Article
15.

Transcriptional networks: reverse-engineering gene regulation on a global scale.

Chua G, Robinson MD, Morris Q, Hughes TR.

Curr Opin Microbiol. 2004 Dec;7(6):638-46. Review.

PMID:
15556037
[PubMed - indexed for MEDLINE]
16.

Refining current knowledge on the yeast FLR1 regulatory network by combined experimental and computational approaches.

Teixeira MC, Dias PJ, Monteiro PT, Sala A, Oliveira AL, Freitas AT, Sá-Correia I.

Mol Biosyst. 2010 Dec;6(12):2471-81. doi: 10.1039/c004881j. Epub 2010 Oct 11.

PMID:
20938527
[PubMed - indexed for MEDLINE]
17.

Global analysis of the regulatory network structure of gene expression in Saccharomyces cerevisiae.

Gunji W, Kai T, Takahashi Y, Maki Y, Kurihara W, Utsugi T, Fujimori F, Murakami Y.

DNA Res. 2004 Jun 30;11(3):163-77.

PMID:
15368892
[PubMed - indexed for MEDLINE]
Free Article
18.

An evolutionary and functional assessment of regulatory network motifs.

Mazurie A, Bottani S, Vergassola M.

Genome Biol. 2005;6(4):R35. Epub 2005 Mar 24.

PMID:
15833122
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Reconstructing genetic networks in yeast.

Zhang Z, Gerstein M.

Nat Biotechnol. 2003 Nov;21(11):1295-7. No abstract available.

PMID:
14595359
[PubMed - indexed for MEDLINE]
20.

Modeling the regulatory network of histone acetylation in Saccharomyces cerevisiae.

Pham H, Ferrari R, Cokus SJ, Kurdistani SK, Pellegrini M.

Mol Syst Biol. 2007;3:153. Epub 2007 Dec 18.

PMID:
18091724
[PubMed - indexed for MEDLINE]
Free PMC Article

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