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Results: 1 to 20 of 225

1.

Evaluation of next generation sequencing platforms for population targeted sequencing studies.

Harismendy O, Ng PC, Strausberg RL, Wang X, Stockwell TB, Beeson KY, Schork NJ, Murray SS, Topol EJ, Levy S, Frazer KA.

Genome Biol. 2009;10(3):R32. doi: 10.1186/gb-2009-10-3-r32. Epub 2009 Mar 27.

PMID:
19327155
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Accurate detection and genotyping of SNPs utilizing population sequencing data.

Bansal V, Harismendy O, Tewhey R, Murray SS, Schork NJ, Topol EJ, Frazer KA.

Genome Res. 2010 Apr;20(4):537-45. doi: 10.1101/gr.100040.109. Epub 2010 Feb 11.

PMID:
20150320
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Preparing a re-sequencing DNA library of 2 cancer candidate genes using the ligation-by-amplification protocol by two PCR reactions.

Su Y, Lin L, Tian G, Chen C, Liu T, Xu X, Qi X, Zhang X, Yang H.

Sci China C Life Sci. 2009 May;52(5):483-91. doi: 10.1007/s11427-009-0066-8. Epub 2009 May 27.

PMID:
19471873
[PubMed - indexed for MEDLINE]
4.

Method for improving sequence coverage uniformity of targeted genomic intervals amplified by LR-PCR using Illumina GA sequencing-by-synthesis technology.

Harismendy O, Frazer K.

Biotechniques. 2009 Mar;46(3):229-31. doi: 10.2144/000113082.

PMID:
19317667
[PubMed - indexed for MEDLINE]
Free Article
5.

DNA sequence capture and enrichment by microarray followed by next-generation sequencing for targeted resequencing: neurofibromatosis type 1 gene as a model.

Chou LS, Liu CS, Boese B, Zhang X, Mao R.

Clin Chem. 2010 Jan;56(1):62-72. doi: 10.1373/clinchem.2009.132639. Epub 2009 Nov 12.

PMID:
19910506
[PubMed - indexed for MEDLINE]
Free Article
6.

A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers.

Quail MA, Smith M, Coupland P, Otto TD, Harris SR, Connor TR, Bertoni A, Swerdlow HP, Gu Y.

BMC Genomics. 2012 Jul 24;13:341. doi: 10.1186/1471-2164-13-341.

PMID:
22827831
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Design of association studies with pooled or un-pooled next-generation sequencing data.

Kim SY, Li Y, Guo Y, Li R, Holmkvist J, Hansen T, Pedersen O, Wang J, Nielsen R.

Genet Epidemiol. 2010 Jul;34(5):479-91. doi: 10.1002/gepi.20501.

PMID:
20552648
[PubMed - indexed for MEDLINE]
8.

The complete genome of an individual by massively parallel DNA sequencing.

Wheeler DA, Srinivasan M, Egholm M, Shen Y, Chen L, McGuire A, He W, Chen YJ, Makhijani V, Roth GT, Gomes X, Tartaro K, Niazi F, Turcotte CL, Irzyk GP, Lupski JR, Chinault C, Song XZ, Liu Y, Yuan Y, Nazareth L, Qin X, Muzny DM, Margulies M, Weinstock GM, Gibbs RA, Rothberg JM.

Nature. 2008 Apr 17;452(7189):872-6. doi: 10.1038/nature06884.

PMID:
18421352
[PubMed - indexed for MEDLINE]
9.

Exome sequencing of a multigenerational human pedigree.

Hedges DJ, Burges D, Powell E, Almonte C, Huang J, Young S, Boese B, Schmidt M, Pericak-Vance MA, Martin E, Zhang X, Harkins TT, Züchner S.

PLoS One. 2009 Dec 14;4(12):e8232. doi: 10.1371/journal.pone.0008232. Erratum in: PLoS One. 2009;4(12). doi: 10.1371/annotation/b0fe9dd5-16e1-4b50-b590-263518fbd5eb. Hedges, Dale [corrected to Hedges, Dale J].

PMID:
20011588
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples.

Hong H, Su Z, Ge W, Shi L, Perkins R, Fang H, Xu J, Chen JJ, Han T, Kaput J, Fuscoe JC, Tong W.

BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S17. doi: 10.1186/1471-2105-9-S9-S17.

PMID:
18793462
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Optimizing hybrid assembly of next-generation sequence data from Enterococcus faecium: a microbe with highly divergent genome.

Wang Y, Yu Y, Pan B, Hao P, Li Y, Shao Z, Xu X, Li X.

BMC Syst Biol. 2012;6 Suppl 3:S21. doi: 10.1186/1752-0509-6-S3-S21. Epub 2012 Dec 17.

PMID:
23282199
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Massively parallel sequencing of ataxia genes after array-based enrichment.

Hoischen A, Gilissen C, Arts P, Wieskamp N, van der Vliet W, Vermeer S, Steehouwer M, de Vries P, Meijer R, Seiqueros J, Knoers NV, Buckley MF, Scheffer H, Veltman JA.

Hum Mutat. 2010 Apr;31(4):494-9. doi: 10.1002/humu.21221.

PMID:
20151403
[PubMed - indexed for MEDLINE]
13.

Next-generation sequencing methods: impact of sequencing accuracy on SNP discovery.

Chan EY.

Methods Mol Biol. 2009;578:95-111. doi: 10.1007/978-1-60327-411-1_5.

PMID:
19768588
[PubMed - indexed for MEDLINE]
14.

Comparison of solution-based exome capture methods for next generation sequencing.

Sulonen AM, Ellonen P, Almusa H, Lepistö M, Eldfors S, Hannula S, Miettinen T, Tyynismaa H, Salo P, Heckman C, Joensuu H, Raivio T, Suomalainen A, Saarela J.

Genome Biol. 2011 Sep 28;12(9):R94. doi: 10.1186/gb-2011-12-9-r94.

PMID:
21955854
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Targeted high throughput sequencing of a cancer-related exome subset by specific sequence capture with a fully automated microarray platform.

Summerer D, Schracke N, Wu H, Cheng Y, Bau S, Stähler CF, Stähler PF, Beier M.

Genomics. 2010 Apr;95(4):241-6. doi: 10.1016/j.ygeno.2010.01.006. Epub 2010 Feb 6.

PMID:
20138981
[PubMed - indexed for MEDLINE]
Free Article
16.

SNP detection for massively parallel whole-genome resequencing.

Li R, Li Y, Fang X, Yang H, Wang J, Kristiansen K, Wang J.

Genome Res. 2009 Jun;19(6):1124-32. doi: 10.1101/gr.088013.108. Epub 2009 May 6.

PMID:
19420381
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Interpretation of custom designed Illumina genotype cluster plots for targeted association studies and next-generation sequence validation.

Tindall EA, Petersen DC, Nikolaysen S, Miller W, Schuster SC, Hayes VM.

BMC Res Notes. 2010 Feb 22;3:39. doi: 10.1186/1756-0500-3-39.

PMID:
20175893
[PubMed]
Free PMC Article
18.

Applications of next-generation sequencing technologies in functional genomics.

Morozova O, Marra MA.

Genomics. 2008 Nov;92(5):255-64. doi: 10.1016/j.ygeno.2008.07.001. Epub 2008 Aug 24. Review.

PMID:
18703132
[PubMed - indexed for MEDLINE]
Free Article
19.

Coverage bias and sensitivity of variant calling for four whole-genome sequencing technologies.

Rieber N, Zapatka M, Lasitschka B, Jones D, Northcott P, Hutter B, Jäger N, Kool M, Taylor M, Lichter P, Pfister S, Wolf S, Brors B, Eils R.

PLoS One. 2013 Jun 11;8(6):e66621. doi: 10.1371/journal.pone.0066621. Print 2013.

PMID:
23776689
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Comparing platforms for C. elegans mutant identification using high-throughput whole-genome sequencing.

Shen Y, Sarin S, Liu Y, Hobert O, Pe'er I.

PLoS One. 2008;3(12):e4012. doi: 10.1371/journal.pone.0004012. Epub 2008 Dec 24.

PMID:
19107202
[PubMed - indexed for MEDLINE]
Free PMC Article

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