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Results: 1 to 20 of 101

1.

Identifying protein-coding genes in genomic sequences.

Harrow J, Nagy A, Reymond A, Alioto T, Patthy L, Antonarakis SE, Guigó R.

Genome Biol. 2009;10(1):201. doi: 10.1186/gb-2009-10-1-201. Epub 2009 Jan 30. Review.

PMID:
19226436
[PubMed - indexed for MEDLINE]
Free PMC Article
2.
3.

Comparison of methods for genomic localization of gene trap sequences.

Harper CA, Huang CC, Stryke D, Kawamoto M, Ferrin TE, Babbitt PC.

BMC Genomics. 2006 Sep 18;7:236.

PMID:
16982004
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Finding protein-coding genes through human polymorphisms.

Wijaya E, Frith MC, Horton P, Asai K.

PLoS One. 2013;8(1):e54210. doi: 10.1371/journal.pone.0054210. Epub 2013 Jan 22.

PMID:
23349826
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Protein genes in repetitive sequence-antifreeze glycoproteins in Atlantic cod genome.

Zhuang X, Yang C, Fevolden SE, Cheng CH.

BMC Genomics. 2012 Jul 2;13:293. doi: 10.1186/1471-2164-13-293.

PMID:
22747999
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Exogean: a framework for annotating protein-coding genes in eukaryotic genomic DNA.

Djebali S, Delaplace F, Roest Crollius H.

Genome Biol. 2006;7 Suppl 1:S7.1-10. Epub 2006 Aug 7.

PMID:
16925841
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.

Bininda-Emonds OR.

BMC Bioinformatics. 2005 Jun 22;6:156.

PMID:
15969769
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Computational inference of homologous gene structures in the human genome.

Yeh RF, Lim LP, Burge CB.

Genome Res. 2001 May;11(5):803-16.

PMID:
11337476
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Reannotation of protein-coding genes based on an improved graphical representation of DNA sequence.

Yu JF, Sun X.

J Comput Chem. 2010 Aug;31(11):2126-35. doi: 10.1002/jcc.21500.

PMID:
20175214
[PubMed - indexed for MEDLINE]
10.

Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

Misra S, Crosby MA, Mungall CJ, Matthews BB, Campbell KS, Hradecky P, Huang Y, Kaminker JS, Millburn GH, Prochnik SE, Smith CD, Tupy JL, Whitfied EJ, Bayraktaroglu L, Berman BP, Bettencourt BR, Celniker SE, de Grey AD, Drysdale RA, Harris NL, Richter J, Russo S, Schroeder AJ, Shu SQ, Stapleton M, Yamada C, Ashburner M, Gelbart WM, Rubin GM, Lewis SE.

Genome Biol. 2002;3(12):RESEARCH0083. Epub 2002 Dec 31. Review.

PMID:
12537572
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Computational prediction of eukaryotic protein-coding genes.

Zhang MQ.

Nat Rev Genet. 2002 Sep;3(9):698-709. Review.

PMID:
12209144
[PubMed - indexed for MEDLINE]
13.

In silico characterization of proteins: UniProt, InterPro and Integr8.

Mulder NJ, Kersey P, Pruess M, Apweiler R.

Mol Biotechnol. 2008 Feb;38(2):165-77. doi: 10.1007/s12033-007-9003-x. Epub 2007 Oct 4. Review.

PMID:
18219596
[PubMed - indexed for MEDLINE]
14.

Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56,419 completely sequenced and manually annotated full-length cDNAs.

Takeda J, Suzuki Y, Nakao M, Barrero RA, Koyanagi KO, Jin L, Motono C, Hata H, Isogai T, Nagai K, Otsuki T, Kuryshev V, Shionyu M, Yura K, Go M, Thierry-Mieg J, Thierry-Mieg D, Wiemann S, Nomura N, Sugano S, Gojobori T, Imanishi T.

Nucleic Acids Res. 2006;34(14):3917-28. Epub 2006 Aug 12.

PMID:
16914452
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Visualizing the genome: techniques for presenting human genome data and annotations.

Loraine AE, Helt GA.

BMC Bioinformatics. 2002 Jul 30;3:19.

PMID:
12149135
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

An assessment of gene prediction accuracy in large DNA sequences.

Guigó R, Agarwal P, Abril JF, Burset M, Fickett JW.

Genome Res. 2000 Oct;10(10):1631-42.

PMID:
11042160
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Computational identification of protein-coding sequences by comparative analysis.

Fontaine A, Touzet H.

Int J Data Min Bioinform. 2009;3(2):160-76.

PMID:
19517987
[PubMed - indexed for MEDLINE]
18.

Genomic sequence around butterfly wing development genes: annotation and comparative analysis.

Conceição IC, Long AD, Gruber JD, Beldade P.

PLoS One. 2011;6(8):e23778. doi: 10.1371/journal.pone.0023778. Epub 2011 Aug 31.

PMID:
21909358
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The K(A)/K(S) ratio test for assessing the protein-coding potential of genomic regions: an empirical and simulation study.

Nekrutenko A, Makova KD, Li WH.

Genome Res. 2002 Jan;12(1):198-202.

PMID:
11779845
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

PREP-Mt: predictive RNA editor for plant mitochondrial genes.

Mower JP.

BMC Bioinformatics. 2005 Apr 12;6:96.

PMID:
15826309
[PubMed - indexed for MEDLINE]
Free PMC Article

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