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Results: 1 to 20 of 415

1.

Genome-wide SNP genotyping highlights the role of natural selection in Plasmodium falciparum population divergence.

Neafsey DE, Schaffner SF, Volkman SK, Park D, Montgomery P, Milner DA Jr, Lukens A, Rosen D, Daniels R, Houde N, Cortese JF, Tyndall E, Gates C, Stange-Thomann N, Sarr O, Ndiaye D, Ndir O, Mboup S, Ferreira MU, Moraes Sdo L, Dash AP, Chitnis CE, Wiegand RC, Hartl DL, Birren BW, Lander ES, Sabeti PC, Wirth DF.

Genome Biol. 2008;9(12):R171. doi: 10.1186/gb-2008-9-12-r171. Epub 2008 Dec 15.

PMID:
19077304
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A genome-wide map of diversity in Plasmodium falciparum.

Volkman SK, Sabeti PC, DeCaprio D, Neafsey DE, Schaffner SF, Milner DA Jr, Daily JP, Sarr O, Ndiaye D, Ndir O, Mboup S, Duraisingh MT, Lukens A, Derr A, Stange-Thomann N, Waggoner S, Onofrio R, Ziaugra L, Mauceli E, Gnerre S, Jaffe DB, Zainoun J, Wiegand RC, Birren BW, Hartl DL, Galagan JE, Lander ES, Wirth DF.

Nat Genet. 2007 Jan;39(1):113-9. Epub 2006 Dec 10.

PMID:
17159979
[PubMed - indexed for MEDLINE]
3.

Geographical distribution of selected and putatively neutral SNPs in Southeast Asian malaria parasites.

Anderson TJ, Nair S, Sudimack D, Williams JT, Mayxay M, Newton PN, Guthmann JP, Smithuis FM, Tran TH, van den Broek IV, White NJ, Nosten F.

Mol Biol Evol. 2005 Dec;22(12):2362-74. Epub 2005 Aug 10.

PMID:
16093566
[PubMed - indexed for MEDLINE]
Free Article
4.

Detection of genome-wide polymorphisms in the AT-rich Plasmodium falciparum genome using a high-density microarray.

Jiang H, Yi M, Mu J, Zhang L, Ivens A, Klimczak LJ, Huyen Y, Stephens RM, Su XZ.

BMC Genomics. 2008 Aug 25;9:398. doi: 10.1186/1471-2164-9-398.

PMID:
18724869
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum.

Anderson TJ, Haubold B, Williams JT, Estrada-Franco JG, Richardson L, Mollinedo R, Bockarie M, Mokili J, Mharakurwa S, French N, Whitworth J, Velez ID, Brockman AH, Nosten F, Ferreira MU, Day KP.

Mol Biol Evol. 2000 Oct;17(10):1467-82.

PMID:
11018154
[PubMed - indexed for MEDLINE]
Free Article
6.

New generation pharmacogenomic tools: a SNP linkage disequilibrium Map, validated SNP assay resource, and high-throughput instrumentation system for large-scale genetic studies.

De La Vega FM, Dailey D, Ziegle J, Williams J, Madden D, Gilbert DA.

Biotechniques. 2002 Jun;Suppl:48-50, 52, 54.

PMID:
12083398
[PubMed - indexed for MEDLINE]
7.

Population genetics and dynamics of Plasmodium falciparum: an ecological view.

Day KP, Koella JC, Nee S, Gupta S, Read AF.

Parasitology. 1992;104 Suppl:S35-52. Review.

PMID:
1589299
[PubMed - indexed for MEDLINE]
8.

Single-nucleotide polymorphism, linkage disequilibrium and geographic structure in the malaria parasite Plasmodium vivax: prospects for genome-wide association studies.

Orjuela-Sánchez P, Karunaweera ND, da Silva-Nunes M, da Silva NS, Scopel KK, Gonçalves RM, Amaratunga C, Sá JM, Socheat D, Fairhust RM, Gunawardena S, Thavakodirasah T, Galapaththy GL, Abeysinghe R, Kawamoto F, Wirth DF, Ferreira MU.

BMC Genet. 2010 Jul 13;11:65. doi: 10.1186/1471-2156-11-65.

PMID:
20626846
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

ama1 genes of sympatric Plasmodium vivax and P. falciparum from Venezuela differ significantly in genetic diversity and recombination frequency.

Ord RL, Tami A, Sutherland CJ.

PLoS One. 2008;3(10):e3366. doi: 10.1371/journal.pone.0003366. Epub 2008 Oct 10.

PMID:
18846221
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A general SNP-based molecular barcode for Plasmodium falciparum identification and tracking.

Daniels R, Volkman SK, Milner DA, Mahesh N, Neafsey DE, Park DJ, Rosen D, Angelino E, Sabeti PC, Wirth DF, Wiegand RC.

Malar J. 2008 Oct 29;7:223. doi: 10.1186/1475-2875-7-223.

PMID:
18959790
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Variations in host genes encoding adhesion molecules and susceptibility to falciparum malaria in India.

Sinha S, Qidwai T, Kanchan K, Anand P, Jha GN, Pati SS, Mohanty S, Mishra SK, Tyagi PK, Sharma SK; Indian Genome Variation Consortium, Venkatesh V, Habib S.

Malar J. 2008 Dec 4;7:250. doi: 10.1186/1475-2875-7-250.

PMID:
19055786
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Sequence diversity and natural selection at domain I of the apical membrane antigen 1 among Indian Plasmodium falciparum populations.

Garg S, Alam MT, Das MK, Dev V, Kumar A, Dash AP, Sharma YD.

Malar J. 2007 Nov 22;6:154.

PMID:
18031585
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Mapping drug resistance genes in Plasmodium falciparum by genome-wide association.

Anderson TJ.

Curr Drug Targets Infect Disord. 2004 Mar;4(1):65-78. Review.

PMID:
15032635
[PubMed - indexed for MEDLINE]
14.

Geographic differentiation of polymorphism in the Plasmodium falciparum malaria vaccine candidate gene SERA5.

Tanabe K, Arisue N, Palacpac NM, Yagi M, Tougan T, Honma H, Ferreira MU, Färnert A, Björkman A, Kaneko A, Nakamura M, Hirayama K, Mita T, Horii T.

Vaccine. 2012 Feb 21;30(9):1583-93. doi: 10.1016/j.vaccine.2011.12.124. Epub 2012 Jan 9.

PMID:
22230587
[PubMed - indexed for MEDLINE]
15.

Evaluating the performance of Affymetrix SNP Array 6.0 platform with 400 Japanese individuals.

Nishida N, Koike A, Tajima A, Ogasawara Y, Ishibashi Y, Uehara Y, Inoue I, Tokunaga K.

BMC Genomics. 2008 Sep 22;9:431. doi: 10.1186/1471-2164-9-431.

PMID:
18803882
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Extreme geographical fixation of variation in the Plasmodium falciparum gamete surface protein gene Pfs48/45 compared with microsatellite loci.

Conway DJ, Machado RL, Singh B, Dessert P, Mikes ZS, Povoa MM, Oduola AM, Roper C.

Mol Biochem Parasitol. 2001 Jul;115(2):145-56.

PMID:
11420101
[PubMed - indexed for MEDLINE]
17.

Evidence for a large-scale population structure of Arabidopsis thaliana from genome-wide single nucleotide polymorphism markers.

Schmid KJ, Törjék O, Meyer R, Schmuths H, Hoffmann MH, Altmann T.

Theor Appl Genet. 2006 Apr;112(6):1104-14. Epub 2006 Feb 2.

PMID:
16453134
[PubMed - indexed for MEDLINE]
18.

Genome-wide single nucleotide polymorphisms reveal population history and adaptive divergence in wild guppies.

Willing EM, Bentzen P, van Oosterhout C, Hoffmann M, Cable J, Breden F, Weigel D, Dreyer C.

Mol Ecol. 2010 Mar;19(5):968-84. doi: 10.1111/j.1365-294X.2010.04528.x. Epub 2010 Feb 8.

PMID:
20149094
[PubMed - indexed for MEDLINE]
19.

Variable SNP density in aspartyl-protease genes of the malaria parasite Plasmodium falciparum.

Barry AE, Leliwa-Sytek A, Man K, Kasper JM, Hartl DL, Day KP.

Gene. 2006 Jul 19;376(2):163-73. Epub 2006 Apr 5.

PMID:
16784823
[PubMed - indexed for MEDLINE]
20.

Identification and analysis of genomic regions with large between-population differentiation in humans.

Myles S, Tang K, Somel M, Green RE, Kelso J, Stoneking M.

Ann Hum Genet. 2008 Jan;72(Pt 1):99-110. doi: 10.1111/j.1469-1809.2007.00390.x.

PMID:
18184145
[PubMed - indexed for MEDLINE]

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