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Results: 1 to 20 of 126

1.

Boolean implication networks derived from large scale, whole genome microarray datasets.

Sahoo D, Dill DL, Gentles AJ, Tibshirani R, Plevritis SK.

Genome Biol. 2008 Oct 30;9(10):R157. doi: 10.1186/gb-2008-9-10-r157.

PMID:
18973690
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Construction, visualisation, and clustering of transcription networks from microarray expression data.

Freeman TC, Goldovsky L, Brosch M, van Dongen S, Mazière P, Grocock RJ, Freilich S, Thornton J, Enright AJ.

PLoS Comput Biol. 2007 Oct;3(10):2032-42.

PMID:
17967053
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Exploring interaction measures to identify informative pairs of genes.

Hanczar B, Henegar C, Zucker JD.

Int J Bioinform Res Appl. 2010;6(6):628-42.

PMID:
21354968
[PubMed - indexed for MEDLINE]
4.

Detecting intergene correlation changes in microarray analysis: a new approach to gene selection.

Hu R, Qiu X, Glazko G, Klebanov L, Yakovlev A.

BMC Bioinformatics. 2009 Jan 15;10:20. doi: 10.1186/1471-2105-10-20.

PMID:
19146700
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Pathway analysis using random forests classification and regression.

Pang H, Lin A, Holford M, Enerson BE, Lu B, Lawton MP, Floyd E, Zhao H.

Bioinformatics. 2006 Aug 15;22(16):2028-36. Epub 2006 Jun 29.

PMID:
16809386
[PubMed - indexed for MEDLINE]
Free Article
6.

Meta analysis algorithms for microarray gene expression data using gene regulatory networks.

Kazmi SA, Kim YA, Shin DG.

Int J Data Min Bioinform. 2010;4(5):487-504.

PMID:
21133037
[PubMed - indexed for MEDLINE]
7.

A primer on gene expression and microarrays for machine learning researchers.

Kuo WP, Kim EY, Trimarchi J, Jenssen TK, Vinterbo SA, Ohno-Machado L.

J Biomed Inform. 2004 Aug;37(4):293-303. Review.

PMID:
15465482
[PubMed - indexed for MEDLINE]
Free Article
8.

Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data.

Jeffery IB, Higgins DG, Culhane AC.

BMC Bioinformatics. 2006 Jul 26;7:359.

PMID:
16872483
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data.

Jupiter D, Chen H, VanBuren V.

BMC Bioinformatics. 2009 Oct 14;10:332. doi: 10.1186/1471-2105-10-332.

PMID:
19828039
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

High confidence rule mining for microarray analysis.

McIntosh T, Chawla S.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Oct-Dec;4(4):611-23.

PMID:
17975272
[PubMed - indexed for MEDLINE]
11.

Improving performances of suboptimal greedy iterative biclustering heuristics via localization.

Erten C, Sözdinler M.

Bioinformatics. 2010 Oct 15;26(20):2594-600. doi: 10.1093/bioinformatics/btq473. Epub 2010 Aug 23.

PMID:
20733064
[PubMed - indexed for MEDLINE]
Free Article
12.

WGCNA: an R package for weighted correlation network analysis.

Langfelder P, Horvath S.

BMC Bioinformatics. 2008 Dec 29;9:559. doi: 10.1186/1471-2105-9-559.

PMID:
19114008
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Zebrafish spotted-microarray for genome-wide expression profiling experiments: data acquisition and analysis.

Lam SH, Krishna Murthy Karuturi R, Gong Z.

Methods Mol Biol. 2009;546:197-226. doi: 10.1007/978-1-60327-977-2_13.

PMID:
19378106
[PubMed - indexed for MEDLINE]
14.

Gene expression data classification using locally linear discriminant embedding.

Li B, Zheng CH, Huang DS, Zhang L, Han K.

Comput Biol Med. 2010 Oct;40(10):802-10. doi: 10.1016/j.compbiomed.2010.08.003. Epub 2010 Sep 22.

PMID:
20864095
[PubMed - indexed for MEDLINE]
15.

Chaotic genetic algorithm for gene selection and classification problems.

Chuang LY, Yang CS, Li JC, Yang CH.

OMICS. 2009 Oct;13(5):407-20. doi: 10.1089/omi.2009.0007.

PMID:
19594377
[PubMed - indexed for MEDLINE]
16.

Cross-platform comparison and visualisation of gene expression data using co-inertia analysis.

Culhane AC, Perrière G, Higgins DG.

BMC Bioinformatics. 2003 Nov 21;4:59.

PMID:
14633289
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Biclustering of microarray data with MOSPO based on crowding distance.

Liu J, Li Z, Hu X, Chen Y.

BMC Bioinformatics. 2009 Apr 29;10 Suppl 4:S9. doi: 10.1186/1471-2105-10-S4-S9.

PMID:
19426457
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists.

Huang da W, Sherman BT, Tan Q, Kir J, Liu D, Bryant D, Guo Y, Stephens R, Baseler MW, Lane HC, Lempicki RA.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W169-75. Epub 2007 Jun 18.

PMID:
17576678
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

cluML: A markup language for clustering and cluster validity assessment of microarray data.

Bolshakova N, Cunningham P.

Appl Bioinformatics. 2005;4(3):211-3.

PMID:
16231963
[PubMed - indexed for MEDLINE]
20.

Boolean dynamics of genetic regulatory networks inferred from microarray time series data.

Martin S, Zhang Z, Martino A, Faulon JL.

Bioinformatics. 2007 Apr 1;23(7):866-74. Epub 2007 Jan 31.

PMID:
17267426
[PubMed - indexed for MEDLINE]
Free Article

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