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Results: 1 to 20 of 124

1.

Concept recognition for extracting protein interaction relations from biomedical text.

Baumgartner WA Jr, Lu Z, Johnson HL, Caporaso JG, Paquette J, Lindemann A, White EK, Medvedeva O, Cohen KB, Hunter L.

Genome Biol. 2008;9 Suppl 2:S9. doi: 10.1186/gb-2008-9-s2-s9. Epub 2008 Sep 1.

PMID:
18834500
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A survey of current work in biomedical text mining.

Cohen AM, Hersh WR.

Brief Bioinform. 2005 Mar;6(1):57-71. Review.

PMID:
15826357
[PubMed - indexed for MEDLINE]
Free Article
3.

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge.

Krallinger M, Morgan A, Smith L, Leitner F, Tanabe L, Wilbur J, Hirschman L, Valencia A.

Genome Biol. 2008;9 Suppl 2:S1. doi: 10.1186/gb-2008-9-s2-s1. Epub 2008 Sep 1.

PMID:
18834487
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

OpenDMAP: an open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression.

Hunter L, Lu Z, Firby J, Baumgartner WA Jr, Johnson HL, Ogren PV, Cohen KB.

BMC Bioinformatics. 2008 Jan 31;9:78. doi: 10.1186/1471-2105-9-78.

PMID:
18237434
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Linking genes to literature: text mining, information extraction, and retrieval applications for biology.

Krallinger M, Valencia A, Hirschman L.

Genome Biol. 2008;9 Suppl 2:S8. doi: 10.1186/gb-2008-9-s2-s8. Epub 2008 Sep 1. Review.

PMID:
18834499
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Status of text-mining techniques applied to biomedical text.

Erhardt RA, Schneider R, Blaschke C.

Drug Discov Today. 2006 Apr;11(7-8):315-25. Review.

PMID:
16580973
[PubMed - indexed for MEDLINE]
7.

Overview of the BioCreative III Workshop.

Arighi CN, Lu Z, Krallinger M, Cohen KB, Wilbur WJ, Valencia A, Hirschman L, Wu CH.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S1. doi: 10.1186/1471-2105-12-S8-S1.

PMID:
22151647
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Gene mention normalization and interaction extraction with context models and sentence motifs.

Hakenberg J, Plake C, Royer L, Strobelt H, Leser U, Schroeder M.

Genome Biol. 2008;9 Suppl 2:S14. doi: 10.1186/gb-2008-9-s2-s14. Epub 2008 Sep 1.

PMID:
18834492
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Extracting protein interactions from text with the unified AkaneRE event extraction system.

Saetre R, Yoshida K, Miwa M, Matsuzaki T, Kano Y, Tsujii J.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):442-53. doi: 10.1109/TCBB.2010.46.

PMID:
20671316
[PubMed - indexed for MEDLINE]
10.

Information retrieval and knowledge discovery utilising a biomedical Semantic Web.

Mukherjea S.

Brief Bioinform. 2005 Sep;6(3):252-62. Review.

PMID:
16212773
[PubMed - indexed for MEDLINE]
Free Article
11.

MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data.

Chatr-aryamontri A, Kerrien S, Khadake J, Orchard S, Ceol A, Licata L, Castagnoli L, Costa S, Derow C, Huntley R, Aranda B, Leroy C, Thorneycroft D, Apweiler R, Cesareni G, Hermjakob H.

Genome Biol. 2008;9 Suppl 2:S5. doi: 10.1186/gb-2008-9-s2-s5. Epub 2008 Sep 1.

PMID:
18834496
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A modular framework for biomedical concept recognition.

Campos D, Matos S, Oliveira JL.

BMC Bioinformatics. 2013 Sep 24;14:281. doi: 10.1186/1471-2105-14-281.

PMID:
24063607
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Extraction of semantic biomedical relations from text using conditional random fields.

Bundschus M, Dejori M, Stetter M, Tresp V, Kriegel HP.

BMC Bioinformatics. 2008 Apr 23;9:207. doi: 10.1186/1471-2105-9-207.

PMID:
18433469
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Empirical investigations into full-text protein interaction Article Categorization Task (ACT) in the BioCreative II.5 Challenge.

Lan M, Su J.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):421-7. doi: 10.1109/TCBB.2010.49.

PMID:
20671314
[PubMed - indexed for MEDLINE]
15.

Figure text extraction in biomedical literature.

Kim D, Yu H.

PLoS One. 2011 Jan 13;6(1):e15338. doi: 10.1371/journal.pone.0015338.

PMID:
21249186
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Automatic extraction of acronym-meaning pairs from MEDLINE databases.

Pustejovsky J, Casta├▒o J, Cochran B, Kotecki M, Morrell M.

Stud Health Technol Inform. 2001;84(Pt 1):371-5.

PMID:
11604766
[PubMed - indexed for MEDLINE]
17.

Automated recognition of malignancy mentions in biomedical literature.

Jin Y, McDonald RT, Lerman K, Mandel MA, Carroll S, Liberman MY, Pereira FC, Winters RS, White PS.

BMC Bioinformatics. 2006 Nov 7;7:492.

PMID:
17090325
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Recognizing names in biomedical texts: a machine learning approach.

Zhou G, Zhang J, Su J, Shen D, Tan C.

Bioinformatics. 2004 May 1;20(7):1178-90. Epub 2004 Feb 10.

PMID:
14871877
[PubMed - indexed for MEDLINE]
Free Article
19.

Analysis of biological processes and diseases using text mining approaches.

Krallinger M, Leitner F, Valencia A.

Methods Mol Biol. 2010;593:341-82. doi: 10.1007/978-1-60327-194-3_16. Review.

PMID:
19957157
[PubMed - indexed for MEDLINE]
20.

Data-poor categorization and passage retrieval for gene ontology annotation in Swiss-Prot.

Ehrler F, Geissb├╝hler A, Jimeno A, Ruch P.

BMC Bioinformatics. 2005;6 Suppl 1:S23. Epub 2005 May 24.

PMID:
15960836
[PubMed - indexed for MEDLINE]
Free PMC Article

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