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Results: 1 to 20 of 228

1.

Linking genes to literature: text mining, information extraction, and retrieval applications for biology.

Krallinger M, Valencia A, Hirschman L.

Genome Biol. 2008;9 Suppl 2:S8. doi: 10.1186/gb-2008-9-s2-s8. Epub 2008 Sep 1. Review.

PMID:
18834499
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies?

Winnenburg R, Wächter T, Plake C, Doms A, Schroeder M.

Brief Bioinform. 2008 Nov;9(6):466-78. doi: 10.1093/bib/bbn043. Epub 2008 Dec 6. Review.

PMID:
19060303
[PubMed - indexed for MEDLINE]
Free Article
3.

An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.

Camon EB, Barrell DG, Dimmer EC, Lee V, Magrane M, Maslen J, Binns D, Apweiler R.

BMC Bioinformatics. 2005;6 Suppl 1:S17. Epub 2005 May 24.

PMID:
15960829
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Analysis of biological processes and diseases using text mining approaches.

Krallinger M, Leitner F, Valencia A.

Methods Mol Biol. 2010;593:341-82. doi: 10.1007/978-1-60327-194-3_16. Review.

PMID:
19957157
[PubMed - indexed for MEDLINE]
5.

Textpresso: an ontology-based information retrieval and extraction system for biological literature.

Müller HM, Kenny EE, Sternberg PW.

PLoS Biol. 2004 Nov;2(11):e309. Epub 2004 Sep 21.

PMID:
15383839
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Evaluation of BioCreAtIvE assessment of task 2.

Blaschke C, Leon EA, Krallinger M, Valencia A.

BMC Bioinformatics. 2005;6 Suppl 1:S16. Epub 2005 May 24.

PMID:
15960828
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge.

Krallinger M, Morgan A, Smith L, Leitner F, Tanabe L, Wilbur J, Hirschman L, Valencia A.

Genome Biol. 2008;9 Suppl 2:S1. doi: 10.1186/gb-2008-9-s2-s1. Epub 2008 Sep 1.

PMID:
18834487
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Text-based knowledge discovery: search and mining of life-sciences documents.

Mack R, Hehenberger M.

Drug Discov Today. 2002 Jun 1;7(11):S89-98. Review. Erratum in: Drug Discov Today. 2002 Sep;7(17):889.

PMID:
12047886
[PubMed - indexed for MEDLINE]
9.

MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data.

Chatr-aryamontri A, Kerrien S, Khadake J, Orchard S, Ceol A, Licata L, Castagnoli L, Costa S, Derow C, Huntley R, Aranda B, Leroy C, Thorneycroft D, Apweiler R, Cesareni G, Hermjakob H.

Genome Biol. 2008;9 Suppl 2:S5. doi: 10.1186/gb-2008-9-s2-s5. Epub 2008 Sep 1.

PMID:
18834496
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Text mining and ontologies in biomedicine: making sense of raw text.

Spasic I, Ananiadou S, McNaught J, Kumar A.

Brief Bioinform. 2005 Sep;6(3):239-51. Review.

PMID:
16212772
[PubMed - indexed for MEDLINE]
Free Article
11.

PLAN2L: a web tool for integrated text mining and literature-based bioentity relation extraction.

Krallinger M, Rodriguez-Penagos C, Tendulkar A, Valencia A.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W160-5. doi: 10.1093/nar/gkp484. Epub 2009 Jun 11.

PMID:
19520768
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Overview of the BioCreative III Workshop.

Arighi CN, Lu Z, Krallinger M, Cohen KB, Wilbur WJ, Valencia A, Hirschman L, Wu CH.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S1. doi: 10.1186/1471-2105-12-S8-S1.

PMID:
22151647
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Evaluation of text data mining for database curation: lessons learned from the KDD Challenge Cup.

Yeh AS, Hirschman L, Morgan AA.

Bioinformatics. 2003;19 Suppl 1:i331-9.

PMID:
12855478
[PubMed - indexed for MEDLINE]
Free Article
14.

Text mining in livestock animal science: introducing the potential of text mining to animal sciences.

Sahadevan S, Hofmann-Apitius M, Schellander K, Tesfaye D, Fluck J, Friedrich CM.

J Anim Sci. 2012 Oct;90(10):3666-76. doi: 10.2527/jas.2011-4841. Epub 2012 Jun 4.

PMID:
22665627
[PubMed - indexed for MEDLINE]
Free Article
15.

Concept recognition for extracting protein interaction relations from biomedical text.

Baumgartner WA Jr, Lu Z, Johnson HL, Caporaso JG, Paquette J, Lindemann A, White EK, Medvedeva O, Cohen KB, Hunter L.

Genome Biol. 2008;9 Suppl 2:S9. doi: 10.1186/gb-2008-9-s2-s9. Epub 2008 Sep 1.

PMID:
18834500
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

BioCreative III interactive task: an overview.

Arighi CN, Roberts PM, Agarwal S, Bhattacharya S, Cesareni G, Chatr-Aryamontri A, Clematide S, Gaudet P, Giglio MG, Harrow I, Huala E, Krallinger M, Leser U, Li D, Liu F, Lu Z, Maltais LJ, Okazaki N, Perfetto L, Rinaldi F, Sætre R, Salgado D, Srinivasan P, Thomas PE, Toldo L, Hirschman L, Wu CH.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S4. doi: 10.1186/1471-2105-12-S8-S4.

PMID:
22151968
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Online tools to support literature-based discovery in the life sciences.

Weeber M, Kors JA, Mons B.

Brief Bioinform. 2005 Sep;6(3):277-86. Review.

PMID:
16212775
[PubMed - indexed for MEDLINE]
Free Article
18.

Knowledge discovery in biology and biotechnology texts: a review of techniques, evaluation strategies, and applications.

Natarajan J, Berrar D, Hack CJ, Dubitzky W.

Crit Rev Biotechnol. 2005 Jan-Jun;25(1-2):31-52. Review.

PMID:
15999851
[PubMed - indexed for MEDLINE]
19.

Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens.

Zaremba S, Ramos-Santacruz M, Hampton T, Shetty P, Fedorko J, Whitmore J, Greene JM, Perna NT, Glasner JD, Plunkett G 3rd, Shaker M, Pot D.

BMC Bioinformatics. 2009 Jun 10;10:177. doi: 10.1186/1471-2105-10-177.

PMID:
19515247
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The BioLexicon: a large-scale terminological resource for biomedical text mining.

Thompson P, McNaught J, Montemagni S, Calzolari N, del Gratta R, Lee V, Marchi S, Monachini M, Pezik P, Quochi V, Rupp CJ, Sasaki Y, Venturi G, Rebholz-Schuhmann D, Ananiadou S.

BMC Bioinformatics. 2011 Oct 12;12:397. doi: 10.1186/1471-2105-12-397.

PMID:
21992002
[PubMed - indexed for MEDLINE]
Free PMC Article

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