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Results: 1 to 20 of 83

1.

Introducing meta-services for biomedical information extraction.

Leitner F, Krallinger M, Rodriguez-Penagos C, Hakenberg J, Plake C, Kuo CJ, Hsu CN, Tsai RT, Hung HC, Lau WW, Johnson CA, Saetre R, Yoshida K, Chen YH, Kim S, Shin SY, Zhang BT, Baumgartner WA Jr, Hunter L, Haddow B, Matthews M, Wang X, Ruch P, Ehrler F, Ozgür A, Erkan G, Radev DR, Krauthammer M, Luong T, Hoffmann R, Sander C, Valencia A.

Genome Biol. 2008;9 Suppl 2:S6. doi: 10.1186/gb-2008-9-s2-s6. Epub 2008 Sep 1.

PMID:
18834497
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

GeneNotes--a novel information management software for biologists.

Hong P, Wong WH.

BMC Bioinformatics. 2005 Feb 1;6:20.

PMID:
15686593
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens.

Zaremba S, Ramos-Santacruz M, Hampton T, Shetty P, Fedorko J, Whitmore J, Greene JM, Perna NT, Glasner JD, Plunkett G 3rd, Shaker M, Pot D.

BMC Bioinformatics. 2009 Jun 10;10:177. doi: 10.1186/1471-2105-10-177.

PMID:
19515247
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Gene mention normalization and interaction extraction with context models and sentence motifs.

Hakenberg J, Plake C, Royer L, Strobelt H, Leser U, Schroeder M.

Genome Biol. 2008;9 Suppl 2:S14. doi: 10.1186/gb-2008-9-s2-s14. Epub 2008 Sep 1.

PMID:
18834492
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

CBioC: beyond a prototype for collaborative annotation of molecular interactions from the literature.

Baral C, Gonzalez G, Gitter A, Teegarden C, Zeigler A, Joshi-Topé G.

Comput Syst Bioinformatics Conf. 2007;6:381-4.

PMID:
17951840
[PubMed - indexed for MEDLINE]
Free Article
6.

Linking genes to literature: text mining, information extraction, and retrieval applications for biology.

Krallinger M, Valencia A, Hirschman L.

Genome Biol. 2008;9 Suppl 2:S8. doi: 10.1186/gb-2008-9-s2-s8. Epub 2008 Sep 1. Review.

PMID:
18834499
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Exploring the boundaries: gene and protein identification in biomedical text.

Finkel J, Dingare S, Manning CD, Nissim M, Alex B, Grover C.

BMC Bioinformatics. 2005;6 Suppl 1:S5. Epub 2005 May 24.

PMID:
15960839
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The distributed annotation system.

Dowell RD, Jokerst RM, Day A, Eddy SR, Stein L.

BMC Bioinformatics. 2001;2:7. Epub 2001 Oct 10.

PMID:
11667947
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Bio-jETI: a framework for semantics-based service composition.

Lamprecht AL, Margaria T, Steffen B.

BMC Bioinformatics. 2009 Oct 1;10 Suppl 10:S8. doi: 10.1186/1471-2105-10-S10-S8.

PMID:
19796405
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

SciMiner: web-based literature mining tool for target identification and functional enrichment analysis.

Hur J, Schuyler AD, States DJ, Feldman EL.

Bioinformatics. 2009 Mar 15;25(6):838-40. doi: 10.1093/bioinformatics/btp049. Epub 2009 Feb 2.

PMID:
19188191
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Inter-species normalization of gene mentions with GNAT.

Hakenberg J, Plake C, Leaman R, Schroeder M, Gonzalez G.

Bioinformatics. 2008 Aug 15;24(16):i126-132. doi: 10.1093/bioinformatics/btn299.

PMID:
18689813
[PubMed - indexed for MEDLINE]
Free Article
12.

MILANO--custom annotation of microarray results using automatic literature searches.

Rubinstein R, Simon I.

BMC Bioinformatics. 2005 Jan 20;6:12.

PMID:
15661078
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

An agent- and ontology-based system for integrating public gene, protein, and disease databases.

Alonso-Calvo R, Maojo V, Billhardt H, Martin-Sanchez F, García-Remesal M, Pérez-Rey D.

J Biomed Inform. 2007 Feb;40(1):17-29. Epub 2006 Mar 20.

PMID:
16621723
[PubMed - indexed for MEDLINE]
Free Article
14.

aGEM: an integrative system for analyzing spatial-temporal gene-expression information.

Jiménez-Lozano N, Segura J, Macías JR, Vega J, Carazo JM.

Bioinformatics. 2009 Oct 1;25(19):2566-72. doi: 10.1093/bioinformatics/btp422. Epub 2009 Jul 9.

PMID:
19592395
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A national human neuroimaging collaboratory enabled by the Biomedical Informatics Research Network (BIRN).

Keator DB, Grethe JS, Marcus D, Ozyurt B, Gadde S, Murphy S, Pieper S, Greve D, Notestine R, Bockholt HJ, Papadopoulos P; BIRN Function; BIRN Morphometry; BIRN-Coordinating.

IEEE Trans Inf Technol Biomed. 2008 Mar;12(2):162-72. doi: 10.1109/TITB.2008.917893.

PMID:
18348946
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

SeqHound: biological sequence and structure database as a platform for bioinformatics research.

Michalickova K, Bader GD, Dumontier M, Lieu H, Betel D, Isserlin R, Hogue CW.

BMC Bioinformatics. 2002 Oct 25;3:32. Epub 2002 Oct 25.

PMID:
12401134
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

CARGO: a web portal to integrate customized biological information.

Cases I, Pisano DG, Andres E, Carro A, Fernández JM, Gómez-López G, Rodriguez JM, Vera JF, Valencia A, Rojas AM.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W16-20. Epub 2007 May 5.

PMID:
17483515
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Implementing the iHOP concept for navigation of biomedical literature.

Hoffmann R, Valencia A.

Bioinformatics. 2005 Sep 1;21 Suppl 2:ii252-8.

PMID:
16204114
[PubMed - indexed for MEDLINE]
Free Article
19.

Concept recognition for extracting protein interaction relations from biomedical text.

Baumgartner WA Jr, Lu Z, Johnson HL, Caporaso JG, Paquette J, Lindemann A, White EK, Medvedeva O, Cohen KB, Hunter L.

Genome Biol. 2008;9 Suppl 2:S9. doi: 10.1186/gb-2008-9-s2-s9. Epub 2008 Sep 1.

PMID:
18834500
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A sentence sliding window approach to extract protein annotations from biomedical articles.

Krallinger M, Padron M, Valencia A.

BMC Bioinformatics. 2005;6 Suppl 1:S19. Epub 2005 May 24.

PMID:
15960831
[PubMed - indexed for MEDLINE]
Free PMC Article

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