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Results: 1 to 20 of 93

1.

Overview of BioCreative II gene normalization.

Morgan AA, Lu Z, Wang X, Cohen AM, Fluck J, Ruch P, Divoli A, Fundel K, Leaman R, Hakenberg J, Sun C, Liu HH, Torres R, Krauthammer M, Lau WW, Liu H, Hsu CN, Schuemie M, Cohen KB, Hirschman L.

Genome Biol. 2008;9 Suppl 2:S3. doi: 10.1186/gb-2008-9-s2-s3. Epub 2008 Sep 1.

PMID:
18834494
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge.

Krallinger M, Morgan A, Smith L, Leitner F, Tanabe L, Wilbur J, Hirschman L, Valencia A.

Genome Biol. 2008;9 Suppl 2:S1. doi: 10.1186/gb-2008-9-s2-s1. Epub 2008 Sep 1.

PMID:
18834487
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Overview of the BioCreative III Workshop.

Arighi CN, Lu Z, Krallinger M, Cohen KB, Wilbur WJ, Valencia A, Hirschman L, Wu CH.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S1. doi: 10.1186/1471-2105-12-S8-S1.

PMID:
22151647
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Gene name identification and normalization using a model organism database.

Morgan AA, Hirschman L, Colosimo M, Yeh AS, Colombe JB.

J Biomed Inform. 2004 Dec;37(6):396-410.

PMID:
15542014
[PubMed - indexed for MEDLINE]
Free Article
5.

BioCreative III interactive task: an overview.

Arighi CN, Roberts PM, Agarwal S, Bhattacharya S, Cesareni G, Chatr-Aryamontri A, Clematide S, Gaudet P, Giglio MG, Harrow I, Huala E, Krallinger M, Leser U, Li D, Liu F, Lu Z, Maltais LJ, Okazaki N, Perfetto L, Rinaldi F, Sætre R, Salgado D, Srinivasan P, Thomas PE, Toldo L, Hirschman L, Wu CH.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S4. doi: 10.1186/1471-2105-12-S8-S4.

PMID:
22151968
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Overview of BioCreAtIvE task 1B: normalized gene lists.

Hirschman L, Colosimo M, Morgan A, Yeh A.

BMC Bioinformatics. 2005;6 Suppl 1:S11. Epub 2005 May 24.

PMID:
15960823
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Overview of BioCreAtIvE: critical assessment of information extraction for biology.

Hirschman L, Yeh A, Blaschke C, Valencia A.

BMC Bioinformatics. 2005;6 Suppl 1:S1. Epub 2005 May 24.

PMID:
15960821
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

An Overview of BioCreative II.5.

Leitner F, Mardis SA, Krallinger M, Cesareni G, Hirschman LA, Valencia A.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):385-99.

PMID:
20704011
[PubMed - indexed for MEDLINE]
9.

SciMiner: web-based literature mining tool for target identification and functional enrichment analysis.

Hur J, Schuyler AD, States DJ, Feldman EL.

Bioinformatics. 2009 Mar 15;25(6):838-40. doi: 10.1093/bioinformatics/btp049. Epub 2009 Feb 2.

PMID:
19188191
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The gene normalization task in BioCreative III.

Lu Z, Kao HY, Wei CH, Huang M, Liu J, Kuo CJ, Hsu CN, Tsai RT, Dai HJ, Okazaki N, Cho HC, Gerner M, Solt I, Agarwal S, Liu F, Vishnyakova D, Ruch P, Romacker M, Rinaldi F, Bhattacharya S, Srinivasan P, Liu H, Torii M, Matos S, Campos D, Verspoor K, Livingston KM, Wilbur WJ.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S2. doi: 10.1186/1471-2105-12-S8-S2.

PMID:
22151901
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Data preparation and interannotator agreement: BioCreAtIvE task 1B.

Colosimo ME, Morgan AA, Yeh AS, Colombe JB, Hirschman L.

BMC Bioinformatics. 2005;6 Suppl 1:S12. Epub 2005 May 24.

PMID:
15960824
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.

Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S3. doi: 10.1186/1471-2105-12-S8-S3.

PMID:
22151929
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Overview of the protein-protein interaction annotation extraction task of BioCreative II.

Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A.

Genome Biol. 2008;9 Suppl 2:S4. doi: 10.1186/gb-2008-9-s2-s4. Epub 2008 Sep 1.

PMID:
18834495
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Inter-species normalization of gene mentions with GNAT.

Hakenberg J, Plake C, Leaman R, Schroeder M, Gonzalez G.

Bioinformatics. 2008 Aug 15;24(16):i126-132. doi: 10.1093/bioinformatics/btn299.

PMID:
18689813
[PubMed - indexed for MEDLINE]
Free Article
15.

Overview of BioCreative II gene mention recognition.

Smith L, Tanabe LK, Ando RJ, Kuo CJ, Chung IF, Hsu CN, Lin YS, Klinger R, Friedrich CM, Ganchev K, Torii M, Liu H, Haddow B, Struble CA, Povinelli RJ, Vlachos A, Baumgartner WA Jr, Hunter L, Carpenter B, Tsai RT, Dai HJ, Liu F, Chen Y, Sun C, Katrenko S, Adriaans P, Blaschke C, Torres R, Neves M, Nakov P, Divoli A, Maña-López M, Mata J, Wilbur WJ.

Genome Biol. 2008;9 Suppl 2:S2. doi: 10.1186/gb-2008-9-s2-s2. Epub 2008 Sep 1.

PMID:
18834493
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

An automated procedure to identify biomedical articles that contain cancer-associated gene variants.

McDonald R, Scott Winters R, Ankuda CK, Murphy JA, Rogers AE, Pereira F, Greenblatt MS, White PS.

Hum Mutat. 2006 Sep;27(9):957-64.

PMID:
16865690
[PubMed - indexed for MEDLINE]
17.

BIOADI: a machine learning approach to identifying abbreviations and definitions in biological literature.

Kuo CJ, Ling MH, Lin KT, Hsu CN.

BMC Bioinformatics. 2009 Dec 3;10 Suppl 15:S7. doi: 10.1186/1471-2105-10-S15-S7.

PMID:
19958517
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Evaluating the automatic mapping of human gene and protein mentions to unique identifiers.

Morgan AA, Wellner B, Colombe JB, Arens R, Colosimo ME, Hirschman L.

Pac Symp Biocomput. 2007:281-91.

PMID:
17990499
[PubMed - indexed for MEDLINE]
Free Article
19.

OntoGene in BioCreative II.

Rinaldi F, Kappeler T, Kaljurand K, Schneider G, Klenner M, Clematide S, Hess M, von Allmen JM, Parisot P, Romacker M, Vachon T.

Genome Biol. 2008;9 Suppl 2:S13. doi: 10.1186/gb-2008-9-s2-s13. Epub 2008 Sep 1.

PMID:
18834491
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

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