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Results: 1 to 20 of 76

1.

Overview of BioCreative II gene mention recognition.

Smith L, Tanabe LK, Ando RJ, Kuo CJ, Chung IF, Hsu CN, Lin YS, Klinger R, Friedrich CM, Ganchev K, Torii M, Liu H, Haddow B, Struble CA, Povinelli RJ, Vlachos A, Baumgartner WA Jr, Hunter L, Carpenter B, Tsai RT, Dai HJ, Liu F, Chen Y, Sun C, Katrenko S, Adriaans P, Blaschke C, Torres R, Neves M, Nakov P, Divoli A, Maña-López M, Mata J, Wilbur WJ.

Genome Biol. 2008;9 Suppl 2:S2. doi: 10.1186/gb-2008-9-s2-s2. Epub 2008 Sep 1.

PMID:
18834493
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge.

Krallinger M, Morgan A, Smith L, Leitner F, Tanabe L, Wilbur J, Hirschman L, Valencia A.

Genome Biol. 2008;9 Suppl 2:S1. doi: 10.1186/gb-2008-9-s2-s1. Epub 2008 Sep 1.

PMID:
18834487
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Overview of the BioCreative III Workshop.

Arighi CN, Lu Z, Krallinger M, Cohen KB, Wilbur WJ, Valencia A, Hirschman L, Wu CH.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S1. doi: 10.1186/1471-2105-12-S8-S1.

PMID:
22151647
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Overview of the protein-protein interaction annotation extraction task of BioCreative II.

Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A.

Genome Biol. 2008;9 Suppl 2:S4. doi: 10.1186/gb-2008-9-s2-s4. Epub 2008 Sep 1.

PMID:
18834495
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Overview of BioCreative II gene normalization.

Morgan AA, Lu Z, Wang X, Cohen AM, Fluck J, Ruch P, Divoli A, Fundel K, Leaman R, Hakenberg J, Sun C, Liu HH, Torres R, Krauthammer M, Lau WW, Liu H, Hsu CN, Schuemie M, Cohen KB, Hirschman L.

Genome Biol. 2008;9 Suppl 2:S3. doi: 10.1186/gb-2008-9-s2-s3. Epub 2008 Sep 1.

PMID:
18834494
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

BioCreAtIvE task 1A: gene mention finding evaluation.

Yeh A, Morgan A, Colosimo M, Hirschman L.

BMC Bioinformatics. 2005;6 Suppl 1:S2. Epub 2005 May 24.

PMID:
15960832
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Overview of BioCreAtIvE: critical assessment of information extraction for biology.

Hirschman L, Yeh A, Blaschke C, Valencia A.

BMC Bioinformatics. 2005;6 Suppl 1:S1. Epub 2005 May 24.

PMID:
15960821
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Exploring species-based strategies for gene normalization.

Verspoor K, Roeder C, Johnson HL, Cohen KB, Baumgartner WA Jr, Hunter LE.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):462-71. doi: 10.1109/TCBB.2010.48.

PMID:
20671318
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

OntoGene in BioCreative II.5.

Rinaldi F, Schneider G, Kaljurand K, Clematide S, Vachon T, Romacker M.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):472-80. doi: 10.1109/TCBB.2010.50.

PMID:
20671319
[PubMed - indexed for MEDLINE]
10.

Boosting performance of gene mention tagging system by hybrid methods.

Li L, Fan W, Huang D, Dang Y, Sun J.

J Biomed Inform. 2012 Feb;45(1):156-64. doi: 10.1016/j.jbi.2011.10.004. Epub 2011 Oct 28.

PMID:
22056694
[PubMed - indexed for MEDLINE]
Free Article
11.

Text detective: a rule-based system for gene annotation in biomedical texts.

Tamames J.

BMC Bioinformatics. 2005;6 Suppl 1:S10. Epub 2005 May 24.

PMID:
15960822
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

OntoGene in BioCreative II.

Rinaldi F, Kappeler T, Kaljurand K, Schneider G, Klenner M, Clematide S, Hess M, von Allmen JM, Parisot P, Romacker M, Vachon T.

Genome Biol. 2008;9 Suppl 2:S13. doi: 10.1186/gb-2008-9-s2-s13. Epub 2008 Sep 1.

PMID:
18834491
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

BioLMiner System: interaction normalization task and interaction pair task in the BioCreative II.5 challenge.

Chen Y, Liu F, Manderick B.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):428-41. doi: 10.1109/TCBB.2010.47.

PMID:
20671315
[PubMed - indexed for MEDLINE]
14.

Efficient extraction of protein-protein interactions from full-text articles.

Hakenberg J, Leaman R, Vo NH, Jonnalagadda S, Sullivan R, Miller C, Tari L, Baral C, Gonzalez G.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):481-94. doi: 10.1109/TCBB.2010.51.

PMID:
20498514
[PubMed - indexed for MEDLINE]
15.

Recognition of protein/gene names from text using an ensemble of classifiers.

Zhou G, Shen D, Zhang J, Su J, Tan S.

BMC Bioinformatics. 2005;6 Suppl 1:S7. Epub 2005 May 24.

PMID:
15960841
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

An Overview of BioCreative II.5.

Leitner F, Mardis SA, Krallinger M, Cesareni G, Hirschman LA, Valencia A.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):385-99.

PMID:
20704011
[PubMed - indexed for MEDLINE]
17.

Integrating high dimensional bi-directional parsing models for gene mention tagging.

Hsu CN, Chang YM, Kuo CJ, Lin YS, Huang HS, Chung IF.

Bioinformatics. 2008 Jul 1;24(13):i286-94. doi: 10.1093/bioinformatics/btn183.

PMID:
18586726
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Soft tagging of overlapping high confidence gene mention variants for cross-species full-text gene normalization.

Kuo CJ, Ling MH, Hsu CN.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S6. doi: 10.1186/1471-2105-12-S8-S6.

PMID:
22152021
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data.

Chatr-aryamontri A, Kerrien S, Khadake J, Orchard S, Ceol A, Licata L, Castagnoli L, Costa S, Derow C, Huntley R, Aranda B, Leroy C, Thorneycroft D, Apweiler R, Cesareni G, Hermjakob H.

Genome Biol. 2008;9 Suppl 2:S5. doi: 10.1186/gb-2008-9-s2-s5. Epub 2008 Sep 1.

PMID:
18834496
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Incorporating rich background knowledge for gene named entity classification and recognition.

Li Y, Lin H, Yang Z.

BMC Bioinformatics. 2009 Jul 17;10:223. doi: 10.1186/1471-2105-10-223.

PMID:
19615051
[PubMed - indexed for MEDLINE]
Free PMC Article

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