Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 96

1.

Gene mention normalization and interaction extraction with context models and sentence motifs.

Hakenberg J, Plake C, Royer L, Strobelt H, Leser U, Schroeder M.

Genome Biol. 2008;9 Suppl 2:S14. doi: 10.1186/gb-2008-9-s2-s14. Epub 2008 Sep 1.

PMID:
18834492
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Overview of the protein-protein interaction annotation extraction task of BioCreative II.

Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A.

Genome Biol. 2008;9 Suppl 2:S4. doi: 10.1186/gb-2008-9-s2-s4. Epub 2008 Sep 1.

PMID:
18834495
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Inter-species normalization of gene mentions with GNAT.

Hakenberg J, Plake C, Leaman R, Schroeder M, Gonzalez G.

Bioinformatics. 2008 Aug 15;24(16):i126-132. doi: 10.1093/bioinformatics/btn299.

PMID:
18689813
[PubMed - indexed for MEDLINE]
Free Article
4.

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge.

Krallinger M, Morgan A, Smith L, Leitner F, Tanabe L, Wilbur J, Hirschman L, Valencia A.

Genome Biol. 2008;9 Suppl 2:S1. doi: 10.1186/gb-2008-9-s2-s1. Epub 2008 Sep 1.

PMID:
18834487
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Concept recognition for extracting protein interaction relations from biomedical text.

Baumgartner WA Jr, Lu Z, Johnson HL, Caporaso JG, Paquette J, Lindemann A, White EK, Medvedeva O, Cohen KB, Hunter L.

Genome Biol. 2008;9 Suppl 2:S9. doi: 10.1186/gb-2008-9-s2-s9. Epub 2008 Sep 1.

PMID:
18834500
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The GNAT library for local and remote gene mention normalization.

Hakenberg J, Gerner M, Haeussler M, Solt I, Plake C, Schroeder M, Gonzalez G, Nenadic G, Bergman CM.

Bioinformatics. 2011 Oct 1;27(19):2769-71. doi: 10.1093/bioinformatics/btr455. Epub 2011 Aug 3.

PMID:
21813477
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Exploring species-based strategies for gene normalization.

Verspoor K, Roeder C, Johnson HL, Cohen KB, Baumgartner WA Jr, Hunter LE.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):462-71. doi: 10.1109/TCBB.2010.48.

PMID:
20671318
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

SciMiner: web-based literature mining tool for target identification and functional enrichment analysis.

Hur J, Schuyler AD, States DJ, Feldman EL.

Bioinformatics. 2009 Mar 15;25(6):838-40. doi: 10.1093/bioinformatics/btp049. Epub 2009 Feb 2.

PMID:
19188191
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Introducing meta-services for biomedical information extraction.

Leitner F, Krallinger M, Rodriguez-Penagos C, Hakenberg J, Plake C, Kuo CJ, Hsu CN, Tsai RT, Hung HC, Lau WW, Johnson CA, Saetre R, Yoshida K, Chen YH, Kim S, Shin SY, Zhang BT, Baumgartner WA Jr, Hunter L, Haddow B, Matthews M, Wang X, Ruch P, Ehrler F, Ozgür A, Erkan G, Radev DR, Krauthammer M, Luong T, Hoffmann R, Sander C, Valencia A.

Genome Biol. 2008;9 Suppl 2:S6. doi: 10.1186/gb-2008-9-s2-s6. Epub 2008 Sep 1.

PMID:
18834497
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Efficient extraction of protein-protein interactions from full-text articles.

Hakenberg J, Leaman R, Vo NH, Jonnalagadda S, Sullivan R, Miller C, Tari L, Baral C, Gonzalez G.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):481-94. doi: 10.1109/TCBB.2010.51.

PMID:
20498514
[PubMed - indexed for MEDLINE]
11.

MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data.

Chatr-aryamontri A, Kerrien S, Khadake J, Orchard S, Ceol A, Licata L, Castagnoli L, Costa S, Derow C, Huntley R, Aranda B, Leroy C, Thorneycroft D, Apweiler R, Cesareni G, Hermjakob H.

Genome Biol. 2008;9 Suppl 2:S5. doi: 10.1186/gb-2008-9-s2-s5. Epub 2008 Sep 1.

PMID:
18834496
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A simple approach for protein name identification: prospects and limits.

Fundel K, Güttler D, Zimmer R, Apostolakis J.

BMC Bioinformatics. 2005;6 Suppl 1:S15. Epub 2005 May 24.

PMID:
15960827
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Linking genes to literature: text mining, information extraction, and retrieval applications for biology.

Krallinger M, Valencia A, Hirschman L.

Genome Biol. 2008;9 Suppl 2:S8. doi: 10.1186/gb-2008-9-s2-s8. Epub 2008 Sep 1. Review.

PMID:
18834499
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Recognizing names in biomedical texts: a machine learning approach.

Zhou G, Zhang J, Su J, Shen D, Tan C.

Bioinformatics. 2004 May 1;20(7):1178-90. Epub 2004 Feb 10.

PMID:
14871877
[PubMed - indexed for MEDLINE]
Free Article
15.

A multistage gene normalization system integrating multiple effective methods.

Li L, Liu S, Li L, Fan W, Huang D, Zhou H.

PLoS One. 2013 Dec 12;8(12):e81956. doi: 10.1371/journal.pone.0081956. eCollection 2013.

PMID:
24349160
[PubMed - in process]
Free PMC Article
16.

Multi-stage gene normalization for full-text articles with context-based species filtering for dynamic dictionary entry selection.

Tsai RT, Lai PT.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S7. doi: 10.1186/1471-2105-12-S8-S7.

PMID:
22151087
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Multistage gene normalization and SVM-based ranking for protein interactor extraction in full-text articles.

Dai HJ, Lai PT, Tsai RT.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):412-20. doi: 10.1109/TCBB.2010.45.

PMID:
20479501
[PubMed - indexed for MEDLINE]
18.

Overview of BioCreAtIvE: critical assessment of information extraction for biology.

Hirschman L, Yeh A, Blaschke C, Valencia A.

BMC Bioinformatics. 2005;6 Suppl 1:S1. Epub 2005 May 24.

PMID:
15960821
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Extraction of semantic biomedical relations from text using conditional random fields.

Bundschus M, Dejori M, Stetter M, Tresp V, Kriegel HP.

BMC Bioinformatics. 2008 Apr 23;9:207. doi: 10.1186/1471-2105-9-207.

PMID:
18433469
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

BioLMiner System: interaction normalization task and interaction pair task in the BioCreative II.5 challenge.

Chen Y, Liu F, Manderick B.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):428-41. doi: 10.1109/TCBB.2010.47.

PMID:
20671315
[PubMed - indexed for MEDLINE]

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk