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Results: 1 to 20 of 71

1.

OntoGene in BioCreative II.

Rinaldi F, Kappeler T, Kaljurand K, Schneider G, Klenner M, Clematide S, Hess M, von Allmen JM, Parisot P, Romacker M, Vachon T.

Genome Biol. 2008;9 Suppl 2:S13. doi: 10.1186/gb-2008-9-s2-s13. Epub 2008 Sep 1.

PMID:
18834491
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Overview of the protein-protein interaction annotation extraction task of BioCreative II.

Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A.

Genome Biol. 2008;9 Suppl 2:S4. doi: 10.1186/gb-2008-9-s2-s4. Epub 2008 Sep 1.

PMID:
18834495
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge.

Krallinger M, Morgan A, Smith L, Leitner F, Tanabe L, Wilbur J, Hirschman L, Valencia A.

Genome Biol. 2008;9 Suppl 2:S1. doi: 10.1186/gb-2008-9-s2-s1. Epub 2008 Sep 1.

PMID:
18834487
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

OntoGene in BioCreative II.5.

Rinaldi F, Schneider G, Kaljurand K, Clematide S, Vachon T, Romacker M.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):472-80. doi: 10.1109/TCBB.2010.50.

PMID:
20671319
[PubMed - indexed for MEDLINE]
5.

Detection of interaction articles and experimental methods in biomedical literature.

Schneider G, Clematide S, Rinaldi F.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S13. doi: 10.1186/1471-2105-12-S8-S13.

PMID:
22151872
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data.

Chatr-aryamontri A, Kerrien S, Khadake J, Orchard S, Ceol A, Licata L, Castagnoli L, Costa S, Derow C, Huntley R, Aranda B, Leroy C, Thorneycroft D, Apweiler R, Cesareni G, Hermjakob H.

Genome Biol. 2008;9 Suppl 2:S5. doi: 10.1186/gb-2008-9-s2-s5. Epub 2008 Sep 1.

PMID:
18834496
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

An Overview of BioCreative II.5.

Leitner F, Mardis SA, Krallinger M, Cesareni G, Hirschman LA, Valencia A.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):385-99.

PMID:
20704011
[PubMed - indexed for MEDLINE]
8.

Overview of BioCreative II gene normalization.

Morgan AA, Lu Z, Wang X, Cohen AM, Fluck J, Ruch P, Divoli A, Fundel K, Leaman R, Hakenberg J, Sun C, Liu HH, Torres R, Krauthammer M, Lau WW, Liu H, Hsu CN, Schuemie M, Cohen KB, Hirschman L.

Genome Biol. 2008;9 Suppl 2:S3. doi: 10.1186/gb-2008-9-s2-s3. Epub 2008 Sep 1.

PMID:
18834494
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Overview of BioCreAtIvE: critical assessment of information extraction for biology.

Hirschman L, Yeh A, Blaschke C, Valencia A.

BMC Bioinformatics. 2005;6 Suppl 1:S1. Epub 2005 May 24.

PMID:
15960821
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Gene name identification and normalization using a model organism database.

Morgan AA, Hirschman L, Colosimo M, Yeh AS, Colombe JB.

J Biomed Inform. 2004 Dec;37(6):396-410.

PMID:
15542014
[PubMed - indexed for MEDLINE]
Free Article
11.

Efficient extraction of protein-protein interactions from full-text articles.

Hakenberg J, Leaman R, Vo NH, Jonnalagadda S, Sullivan R, Miller C, Tari L, Baral C, Gonzalez G.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):481-94. doi: 10.1109/TCBB.2010.51.

PMID:
20498514
[PubMed - indexed for MEDLINE]
12.

Relation mining experiments in the pharmacogenomics domain.

Rinaldi F, Schneider G, Clematide S.

J Biomed Inform. 2012 Oct;45(5):851-61. doi: 10.1016/j.jbi.2012.04.014. Epub 2012 May 10.

PMID:
22580177
[PubMed - indexed for MEDLINE]
Free Article
13.

Selective dissemination and indexing of scientific information.

Schneider JH.

Science. 1971 Jul 23;173(3994):300-8.

PMID:
5559903
[PubMed - indexed for MEDLINE]
14.

Discovering gene annotations in biomedical text databases.

Cakmak A, Ozsoyoglu G.

BMC Bioinformatics. 2008 Mar 6;9:143. doi: 10.1186/1471-2105-9-143.

PMID:
18325104
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Extract interaction detection methods from the biological literature.

Wang H, Huang M, Zhu X.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S55. doi: 10.1186/1471-2105-10-S1-S55.

PMID:
19208158
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Empirical investigations into full-text protein interaction Article Categorization Task (ACT) in the BioCreative II.5 Challenge.

Lan M, Su J.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):421-7. doi: 10.1109/TCBB.2010.49.

PMID:
20671314
[PubMed - indexed for MEDLINE]
17.

The FEBS Letters SDA corpus: a collection of protein interaction articles with high quality annotations for the BioCreative II.5 online challenge and the text mining community.

Leitner F, Krallinger M, Cesareni G, Valencia A.

FEBS Lett. 2010 Oct 8;584(19):4129-30. doi: 10.1016/j.febslet.2010.08.026. Epub 2010 Aug 20. No abstract available.

PMID:
20728446
[PubMed - indexed for MEDLINE]
Free Article
18.

Mining physical protein-protein interactions from the literature.

Huang M, Ding S, Wang H, Zhu X.

Genome Biol. 2008;9 Suppl 2:S12. doi: 10.1186/gb-2008-9-s2-s12. Epub 2008 Sep 1.

PMID:
18834490
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Detecting experimental techniques and selecting relevant documents for protein-protein interactions from biomedical literature.

Wang X, Rak R, Restificar A, Nobata C, Rupp CJ, Batista-Navarro RT, Nawaz R, Ananiadou S.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S11. doi: 10.1186/1471-2105-12-S8-S11.

PMID:
22151769
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Finding genomic ontology terms in text using evidence content.

Couto FM, Silva MJ, Coutinho PM.

BMC Bioinformatics. 2005;6 Suppl 1:S21. Epub 2005 May 24.

PMID:
15960834
[PubMed - indexed for MEDLINE]
Free PMC Article

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