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Results: 1 to 20 of 108

1.

Mining physical protein-protein interactions from the literature.

Huang M, Ding S, Wang H, Zhu X.

Genome Biol. 2008;9 Suppl 2:S12. doi: 10.1186/gb-2008-9-s2-s12. Epub 2008 Sep 1.

PMID:
18834490
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge.

Krallinger M, Morgan A, Smith L, Leitner F, Tanabe L, Wilbur J, Hirschman L, Valencia A.

Genome Biol. 2008;9 Suppl 2:S1. doi: 10.1186/gb-2008-9-s2-s1. Epub 2008 Sep 1.

PMID:
18834487
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data.

Chatr-aryamontri A, Kerrien S, Khadake J, Orchard S, Ceol A, Licata L, Castagnoli L, Costa S, Derow C, Huntley R, Aranda B, Leroy C, Thorneycroft D, Apweiler R, Cesareni G, Hermjakob H.

Genome Biol. 2008;9 Suppl 2:S5. doi: 10.1186/gb-2008-9-s2-s5. Epub 2008 Sep 1.

PMID:
18834496
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Overview of the protein-protein interaction annotation extraction task of BioCreative II.

Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A.

Genome Biol. 2008;9 Suppl 2:S4. doi: 10.1186/gb-2008-9-s2-s4. Epub 2008 Sep 1.

PMID:
18834495
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

BioCreative III interactive task: an overview.

Arighi CN, Roberts PM, Agarwal S, Bhattacharya S, Cesareni G, Chatr-Aryamontri A, Clematide S, Gaudet P, Giglio MG, Harrow I, Huala E, Krallinger M, Leser U, Li D, Liu F, Lu Z, Maltais LJ, Okazaki N, Perfetto L, Rinaldi F, Sætre R, Salgado D, Srinivasan P, Thomas PE, Toldo L, Hirschman L, Wu CH.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S4. doi: 10.1186/1471-2105-12-S8-S4.

PMID:
22151968
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Evaluation of BioCreAtIvE assessment of task 2.

Blaschke C, Leon EA, Krallinger M, Valencia A.

BMC Bioinformatics. 2005;6 Suppl 1:S16. Epub 2005 May 24.

PMID:
15960828
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.

Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S3. doi: 10.1186/1471-2105-12-S8-S3.

PMID:
22151929
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Dynamic programming re-ranking for PPI interactor and pair extraction in full-text articles.

Tsai RT, Lai PT.

BMC Bioinformatics. 2011 Feb 23;12:60. doi: 10.1186/1471-2105-12-60.

PMID:
21342534
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

An Overview of BioCreative II.5.

Leitner F, Mardis SA, Krallinger M, Cesareni G, Hirschman LA, Valencia A.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):385-99.

PMID:
20704011
[PubMed - indexed for MEDLINE]
10.

Overview of BioCreAtIvE: critical assessment of information extraction for biology.

Hirschman L, Yeh A, Blaschke C, Valencia A.

BMC Bioinformatics. 2005;6 Suppl 1:S1. Epub 2005 May 24.

PMID:
15960821
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Overview of the BioCreative III Workshop.

Arighi CN, Lu Z, Krallinger M, Cohen KB, Wilbur WJ, Valencia A, Hirschman L, Wu CH.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S1. doi: 10.1186/1471-2105-12-S8-S1.

PMID:
22151647
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Towards semi-automated curation: using text mining to recreate the HIV-1, human protein interaction database.

Jamieson DG, Gerner M, Sarafraz F, Nenadic G, Robertson DL.

Database (Oxford). 2012 Apr 23;2012:bas023. doi: 10.1093/database/bas023. Print 2012.

PMID:
22529179
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature.

Lourenço A, Conover M, Wong A, Nematzadeh A, Pan F, Shatkay H, Rocha LM.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S12. doi: 10.1186/1471-2105-12-S8-S12. Erratum in: BMC Bioinformatics. 2012;13:180.

PMID:
22151823
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The eFIP system for text mining of protein interaction networks of phosphorylated proteins.

Tudor CO, Arighi CN, Wang Q, Wu CH, Vijay-Shanker K.

Database (Oxford). 2012 Dec 5;2012:bas044. doi: 10.1093/database/bas044. Print 2012.

PMID:
23221174
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Classifying protein-protein interaction articles using word and syntactic features.

Kim S, Wilbur WJ.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S9. doi: 10.1186/1471-2105-12-S8-S9.

PMID:
22151252
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

How to link ontologies and protein-protein interactions to literature: text-mining approaches and the BioCreative experience.

Krallinger M, Leitner F, Vazquez M, Salgado D, Marcelle C, Tyers M, Valencia A, Chatr-aryamontri A.

Database (Oxford). 2012 Mar 21;2012:bas017. doi: 10.1093/database/bas017. Print 2012.

PMID:
22438567
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Detecting experimental techniques and selecting relevant documents for protein-protein interactions from biomedical literature.

Wang X, Rak R, Restificar A, Nobata C, Rupp CJ, Batista-Navarro RT, Nawaz R, Ananiadou S.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S11. doi: 10.1186/1471-2105-12-S8-S11.

PMID:
22151769
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases.

Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S8. doi: 10.1186/1471-2105-12-S8-S8.

PMID:
22151178
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.

Arighi CN, Carterette B, Cohen KB, Krallinger M, Wilbur WJ, Fey P, Dodson R, Cooper L, Van Slyke CE, Dahdul W, Mabee P, Li D, Harris B, Gillespie M, Jimenez S, Roberts P, Matthews L, Becker K, Drabkin H, Bello S, Licata L, Chatr-aryamontri A, Schaeffer ML, Park J, Haendel M, Van Auken K, Li Y, Chan J, Muller HM, Cui H, Balhoff JP, Chi-Yang Wu J, Lu Z, Wei CH, Tudor CO, Raja K, Subramani S, Natarajan J, Cejuela JM, Dubey P, Wu C.

Database (Oxford). 2013 Jan 17;2013:bas056. doi: 10.1093/database/bas056. Print 2013.

PMID:
23327936
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Efficient extraction of protein-protein interactions from full-text articles.

Hakenberg J, Leaman R, Vo NH, Jonnalagadda S, Sullivan R, Miller C, Tari L, Baral C, Gonzalez G.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):481-94. doi: 10.1109/TCBB.2010.51.

PMID:
20498514
[PubMed - indexed for MEDLINE]

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